RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MS4A2Q01362 244 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CTBSQ01459 385 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 SLC10A2Q12908 348 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 PCLAFQ15004 111 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PSMD6Q15008 389 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CYTH1Q15438 398 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 XKR9Q5GH70 373 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 PACS1Q6VY07 963 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 USP37Q86T82 979 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 RFX6Q8HWS3 928 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 CPNE9Q8IYJ1 553 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 ADCY4Q8NFM4 1077 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 SPATA18Q8TC71 538 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 RSPH1Q8WYR4 309 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 GFM2Q969S9 779 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 FAF2Q96CS3 445 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 BIRC8Q96P09 236 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 DHX33Q9H6R0 707 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 MAN1C1Q9NR34 630 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 COL20A1Q9P218 1284 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 SLC17A6Q9P2U8 582 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 SLC9A2Q9UBY0 812 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 FAM198AQ9UFP1 575 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 HERC5Q9UII4 1024 aaKnown RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 ARHGAP26Q9UNA1 814 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 FAF1Q9UNN5 650 aaPredicted RBP7.01□□□□□ -1.29
VPS39-202ENST00000348544 ARID2Q68CP9 1835 aa7.01□□□□□ -1.29
VPS39-202ENST00000348544 LTBP1Q14766 1721 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PRSS51A0A1B0GVH4 220 aa7□□□□□ -1.29
VPS39-202ENST00000348544 C7orf72A4D263 438 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TRIM43BA6NCK2 446 aa7□□□□□ -1.29
VPS39-202ENST00000348544 SLC15A5A6NIM6 579 aa7□□□□□ -1.29
VPS39-202ENST00000348544 FAM159BA6NKW6 160 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TMX2-CTNND1H3BSU7 103 aa7□□□□□ -1.29
VPS39-202ENST00000348544 MCF2LO15068 1137 aa7□□□□□ -1.29
VPS39-202ENST00000348544 CHADO15335 359 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TBC1D12O60347 775 aa7□□□□□ -1.29
VPS39-202ENST00000348544 KRT38O76015 456 aa7□□□□□ -1.29
VPS39-202ENST00000348544 GH2P01242 217 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PSMA2P25787 234 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ADORA2AP29274 412 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ACOT2P49753 483 aa7□□□□□ -1.29
VPS39-202ENST00000348544 STAT2P52630 851 aa7□□□□□ -1.29
VPS39-202ENST00000348544 NDST2P52849 883 aa7□□□□□ -1.29
VPS39-202ENST00000348544 KLF10Q13118 480 aa7□□□□□ -1.29
VPS39-202ENST00000348544 CBLBQ13191 982 aa7□□□□□ -1.29
VPS39-202ENST00000348544 MMRN1Q13201 1228 aa7□□□□□ -1.29
VPS39-202ENST00000348544 DMP1Q13316 513 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 C16orf72Q14CZ0 275 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ABCB5Q2M3G0 1257 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PPM1LQ5SGD2 360 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ZBTB41Q5SVQ8 909 aa7□□□□□ -1.29
VPS39-202ENST00000348544 N4BP2L1Q5TBK1 243 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 LGSNQ5TDP6 509 aa7□□□□□ -1.29
VPS39-202ENST00000348544 POTEAQ6S8J7 498 aa7□□□□□ -1.29
VPS39-202ENST00000348544 LPCAT2Q7L5N7 544 aa7□□□□□ -1.29
VPS39-202ENST00000348544 UNC5BQ8IZJ1 945 aa7□□□□□ -1.29
VPS39-202ENST00000348544 MPP5Q8N3R9 675 aa7□□□□□ -1.29
VPS39-202ENST00000348544 UBR7Q8N806 425 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TMEM102Q8N9M5 508 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 TSPAN14Q8NG11 270 aa7□□□□□ -1.29
VPS39-202ENST00000348544 GIPC3Q8TF64 312 aa7□□□□□ -1.29
VPS39-202ENST00000348544 LENG8Q96PV6 779 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 RTKNQ9BST9 563 aa7□□□□□ -1.29
VPS39-202ENST00000348544 HAPLN2Q9GZV7 340 aa7□□□□□ -1.29
VPS39-202ENST00000348544 RAB6BQ9NRW1 208 aa7□□□□□ -1.29
VPS39-202ENST00000348544 RRN3Q9NYV6 651 aa7□□□□□ -1.29
VPS39-202ENST00000348544 THEGQ9P2T0 379 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TRDMT1O14717 391 aaKnown RBP7□□□□□ -1.29
VPS39-202ENST00000348544 XPO1O14980 1071 aaKnown RBP7□□□□□ -1.29
VPS39-202ENST00000348544 FOXD2O60548 495 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 KLHL41O60662 606 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PLIN3O60664 434 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ENTPD3O75355 529 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ALDOAP04075 364 aaKnown RBP7□□□□□ -1.29
VPS39-202ENST00000348544 IDO1P14902 403 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ZNF26P17031 533 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 GARTP22102 1010 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ATXN3P54252 364 aaPredicted RBP7□□□□□ -1.29
VPS39-202ENST00000348544 ROR1Q01973 937 aa7□□□□□ -1.29
VPS39-202ENST00000348544 RELAQ04206 551 aa7□□□□□ -1.29
VPS39-202ENST00000348544 FLOT2Q14254 428 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PPP2R5DQ14738 602 aa7□□□□□ -1.29
VPS39-202ENST00000348544 TGFBIQ15582 683 aa7□□□□□ -1.29
VPS39-202ENST00000348544 ZNF423Q2M1K9 1284 aa7□□□□□ -1.29
VPS39-202ENST00000348544 CRY2Q49AN0 593 aa7□□□□□ -1.29
VPS39-202ENST00000348544 PRR5LQ6MZQ0 368 aa7□□□□□ -1.29
VPS39-202ENST00000348544 DARS2Q6PI48 645 aaKnown RBP7□□□□□ -1.29
VPS39-202ENST00000348544 TMEM126BQ8IUX1 230 aa7□□□□□ -1.29
VPS39-202ENST00000348544 C10orf107Q8IVU9 208 aa7□□□□□ -1.29
VPS39-202ENST00000348544 SLC15A3Q8IY34 581 aa7□□□□□ -1.29
VPS39-202ENST00000348544 THNSL1Q8IYQ7 743 aa7□□□□□ -1.29
VPS39-202ENST00000348544 SAMD3Q8N6K7 520 aa7□□□□□ -1.29
VPS39-202ENST00000348544 EMC1Q8N766 993 aa7□□□□□ -1.29
VPS39-202ENST00000348544 RNF148Q8N7C7 305 aa7□□□□□ -1.29
VPS39-202ENST00000348544 OR5B17Q8NGF7 314 aa7□□□□□ -1.29
VPS39-202ENST00000348544 MAPK15Q8TD08 544 aa7□□□□□ -1.29
VPS39-202ENST00000348544 LRRN4Q8WUT4 740 aa7□□□□□ -1.29
VPS39-202ENST00000348544 APBB2Q92870 758 aa7□□□□□ -1.29
VPS39-202ENST00000348544 KLHL32Q96NJ5 620 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms