RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 GDPD5Q8WTR4 605 aa16.41■□□□□ 0.22
HMGA1-202ENST00000347617 USP6NLQ92738 828 aa16.41■□□□□ 0.22
HMGA1-202ENST00000347617 RILPQ96NA2 401 aa16.41■□□□□ 0.22
HMGA1-202ENST00000347617 PI4K2AQ9BTU6 479 aa16.41■□□□□ 0.22
HMGA1-202ENST00000347617 MRPS26Q9BYN8 205 aaKnown RBP16.41■□□□□ 0.22
HMGA1-202ENST00000347617 KLHL11Q9NVR0 708 aa16.41■□□□□ 0.22
HMGA1-202ENST00000347617 DNAAF2Q9NVR5 837 aaKnown RBP16.41■□□□□ 0.22
HMGA1-202ENST00000347617 TLL2Q9Y6L7 1015 aa16.41■□□□□ 0.22
HMGA1-202ENST00000347617 TTLL13PA6NNM8 815 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 TRIM49D1C9J1S8 452 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 C4BPAP04003 597 aaKnown RBP16.4■□□□□ 0.22
HMGA1-202ENST00000347617 WEE2P0C1S8 567 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 ELK3P41970 407 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 SREBF2Q12772 1141 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 KBTBD12Q3ZCT8 623 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 BORAQ6PGQ7 559 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 UGT2A3Q6UWM9 527 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 TRIM74Q86UV6 250 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 TRIM73Q86UV7 250 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 IFNLR1Q8IU57 520 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-202ENST00000347617 TMEM35BQ8NCS4 154 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 NPLOC4Q8TAT6 608 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 HAUS1Q96CS2 278 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 LRRC39Q96DD0 335 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 MPP4Q96JB8 637 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 PRICKLE1Q96MT3 831 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-202ENST00000347617 NRDE2Q9H7Z3 1164 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 ZFYVE28Q9HCC9 887 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 C6orf203Q9P0P8 240 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-202ENST00000347617 BCAP29Q9UHQ4 241 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 AGO2Q9UKV8 859 aaKnown RBP16.4■□□□□ 0.22
HMGA1-202ENST00000347617 PADI4Q9UM07 663 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 CHMP2BQ9UQN3 213 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 MAD1L1Q9Y6D9 718 aa16.4■□□□□ 0.22
HMGA1-202ENST00000347617 ARHGAP42A6NI28 874 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 C3orf70A6NLC5 250 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-202ENST00000347617 TTC36A6NLP5 189 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 E5RJQ4 531 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 APOC4-APOC2K7ER74 178 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 MCF2LO15068 1137 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 MSCO60682 206 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 TMEM63AO94886 807 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 APOC2P02655 101 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 CNTFP26441 200 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 CRHR1P34998 444 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 ADCYAP1R1P41586 468 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 TM4SF4P48230 202 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 COPAP53621 1224 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 YWHAGP61981 247 aaKnown RBP eCLIP16.39■□□□□ 0.21
HMGA1-202ENST00000347617 SULT2A1Q06520 285 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 ZNF252P-AS1Q0IIN9 211 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 GRM1Q13255 1194 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 STX3Q13277 289 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 MSLNQ13421 630 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-202ENST00000347617 CYLC2Q14093 348 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-202ENST00000347617 CHI3L2Q15782 390 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 SFT2D3Q587I9 215 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 OLFML2BQ68BL8 750 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 TMEM270Q6UE05 265 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 RFX8Q6ZV50 586 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 TRIM50Q86XT4 487 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 LRRC43Q8N309 656 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 C16orf70Q9BSU1 422 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 MRPL4Q9BYD3 311 aaKnown RBP16.39■□□□□ 0.21
HMGA1-202ENST00000347617 C12orf65Q9H3J6 166 aaKnown RBP16.39■□□□□ 0.21
HMGA1-202ENST00000347617 CPA4Q9UI42 421 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 RAB26Q9ULW5 256 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 DMTF1Q9Y222 760 aa16.39■□□□□ 0.21
HMGA1-202ENST00000347617 PRR5-ARHGAP8B1AHC4 643 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 KBTBD13C9JR72 458 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ZSCAN9O15535 394 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 TOM1L1O75674 476 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 USP1O94782 785 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 BPGMP07738 259 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 PRKCHP24723 683 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 CDH5P33151 784 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 HSPA13P48723 471 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ZNF132P52740 706 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 RPL7AP62424 266 aaKnown RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ARHGAP8P85298 464 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 DPYSL3Q14195 570 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 HSF5Q4G112 596 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 OGFRL1Q5TC84 451 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 C4orf22Q6V702 233 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 AHI1Q8N157 1196 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 LINC01465Q8N7H1 131 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 FBXO27Q8NI29 283 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 FNIP1Q8TF40 1166 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 AFG1LQ8WV93 481 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 CMTM5Q96DZ9 223 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 MCEEQ96PE7 176 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 KCNK16Q96T55 309 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 ADAM33Q9BZ11 813 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 FZD8Q9H461 694 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 RNPEPQ9H4A4 650 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 PREBQ9HCU5 417 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 APOBEC2Q9Y235 224 aaKnown RBP16.38■□□□□ 0.21
HMGA1-202ENST00000347617 Q9Y3F1 56 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 C2orf71A6NGG8 1288 aa16.38■□□□□ 0.21
HMGA1-202ENST00000347617 C22orf31O95567 290 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms