RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 COLEC10Q9Y6Z7 277 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 NRP1O14786 923 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 HADHAP40939 763 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 GSDMDP57764 484 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PKDCCQ504Y2 493 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TCP11X2Q5H9J9 407 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 LAIR1Q6GTX8 287 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 NAPEPLDQ6IQ20 393 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 RBMS3Q6XE24 437 aaKnown RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 HORMAD2Q8N7B1 307 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CEP70Q8NHQ1 597 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 GIMAP7Q8NHV1 300 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 KLC2Q9H0B6 622 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 SH3BGRL2Q9UJC5 107 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 V9GYY5 206 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CEP152O94986 1710 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PFKFB2O60825 505 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TAL1P17542 331 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 ADSLP30566 484 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 BRCC3P46736 316 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TAP1Q03518 808 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TTC23Q5W5X9 447 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TIGD7Q6NT04 549 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PASD1Q8IV76 773 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 SRRM1Q8IYB3 904 aaKnown RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 SCAIQ8N9R8 606 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 OTUB2Q96DC9 234 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 FOXP3Q9BZS1 431 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 RANBP17Q9H2T7 1088 aaKnown RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CYP3A43Q9HB55 503 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PALMDQ9NP74 551 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 MID2Q9UJV3 735 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CLUHO75153 1309 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 LRP6O75581 1613 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 A0A087WWV3 80 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 FAM170AA1A519 330 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 KIAA0355O15063 1070 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CYP26A1O43174 497 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CCNB2O95067 398 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 NR3C1P04150 777 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 CPA1P15085 419 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TRIM32Q13049 653 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 GRIN2CQ14957 1233 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 MINDY4Q4G0A6 757 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 FASTKD1Q53R41 847 aaKnown RBP8.68□□□□□ -1.02
HMGB1-203ENST00000341423 MIIPQ5JXC2 388 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 BSNDQ8WZ55 320 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 FBRSQ9HAH7 460 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 POLD4Q9HCU8 107 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 TRIM10Q9UDY6 481 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 PCSK1NQ9UHG2 260 aa8.68□□□□□ -1.02
HMGB1-203ENST00000341423 A0A1B0GTW7 788 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 GOLGA8MH3BSY2 632 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 RHOP08100 348 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SPOPLQ6IQ16 392 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 RALGPS2Q86X27 583 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 POTEDQ86YR6 584 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 TMEM126BQ8IUX1 230 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ARL14EPQ8N8R7 260 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ZCCHC14Q8WYQ9 949 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 IGSF21Q96ID5 467 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ARRDC1-AS1Q9H2J1 176 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 EBF3Q9H4W6 596 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 REREQ9P2R6 1566 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 A0A1W2PQ67 120 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ENPP3O14638 875 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SLC26A4O43511 780 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 CXCL8P10145 99 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 CYBAP13498 195 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 STX1BP61266 288 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ZNF423Q2M1K9 1284 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 GLIPR1L2Q4G1C9 344 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 CDKL3Q8IVW4 592 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 HHIPQ96QV1 700 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ZIC5Q96T25 663 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 TBC1D13Q9NVG8 400 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 FANCLQ9NW38 375 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SPECC1L-ADORA2AF8WAN1 911 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ACOT7O00154 380 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 DCNP07585 359 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 GRIA2P42262 883 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PXNP49023 591 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ZNF131P52739 623 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 FRMPD4Q14CM0 1322 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 UGT3A1Q6NUS8 523 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PCGF5Q86SE9 256 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SIDT2Q8NBJ9 832 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 TTC13Q8NBP0 860 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 ATAD1Q8NBU5 361 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PPHLN1Q8NEY8 458 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 PBX4Q9BYU1 374 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 UBA2Q9UBT2 640 aaPredicted RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SERTAD3Q9UJW9 196 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SMG5Q9UPR3 1016 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 KDM5AP29375 1690 aaKnown RBP8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SERPINF2P08697 491 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 SLFN14P0C7P3 912 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 UQCRBP14927 111 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 FGFR3P22607 806 aa8.67□□□□□ -1.02
HMGB1-203ENST00000341423 GRK6P43250 576 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms