RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SNX10Q9Y5X0 201 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 MBLAC1A4D2B0 266 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PTGESO14684 152 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 USP12O75317 370 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 ZWINTO95229 277 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PGK1P00558 417 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 CSH1P0DML2 217 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 CSH2P0DML3 217 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 SNX16P57768 344 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PLEKHG4Q58EX7 1191 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 SLC45A4Q5BKX6 768 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 CDKL3Q8IVW4 592 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 SLC7A14Q8TBB6 771 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 EDEM1Q92611 657 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 ZIC5Q96T25 663 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 LBHD1Q9BQE6 289 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 NOD2Q9HC29 1040 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PCMTD2Q9NV79 361 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 DERAQ9Y315 318 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 WDR27A2RRH5 827 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 COPEO14579 308 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 NRP1O14786 923 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 ATP6V1G2O95670 118 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 GSTA1P08263 222 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 KITP10721 976 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PTPN1P18031 435 aaKnown RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 GMPRP36959 345 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 TKTL1P51854 596 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 DPYSL2Q16555 572 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 GALNTL6Q49A17 601 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 CRYBG2Q8N1P7 616 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 ARMC2Q8NEN0 867 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 DHRS4Q9BTZ2 278 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PLAC1Q9HBJ0 212 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 DDX43Q9NXZ2 648 aaKnown RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 STARD13Q9Y3M8 1113 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 BCLAF3A2AJT9 711 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SLC8A3P57103 927 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 FSCN1Q16658 493 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SV2CQ496J9 727 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 GNASQ5JWF2 1037 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 MTDHQ86UE4 582 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 TNIP3Q96KP6 325 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ULBP1Q9BZM6 244 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 MARCOQ9UEW3 520 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 NUMBLQ9Y6R0 609 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 CCDC78A2IDD5 438 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 MYBPHLA2RUH7 354 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 DCAF8L1A6NGE4 600 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 FAM72CH0Y354 149 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 AMHP03971 560 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 USP17L7P0C7H9 530 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 MATKP42679 507 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 PTPN9P43378 593 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ZNF157P51786 506 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 CACNA2D1P54289 1103 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 FAM72AQ5TYM5 149 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 RNF43Q68DV7 783 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 FAM72DQ6L9T8 149 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 NLRP9Q7RTR0 991 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 GPRIN1Q7Z2K8 1008 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SLC26A11Q86WA9 606 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 FAM72BQ86X60 149 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SUGP1Q8IWZ8 645 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 TFB1MQ8WVM0 346 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 HTR3CQ8WXA8 447 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 WNT8BQ93098 351 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ATXN7L3BQ96GX2 97 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SRPK1Q96SB4 655 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ARHGEF4Q9NR80 690 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 MIOSQ9NXC5 875 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 USH1CQ9Y6N9 552 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 XPOTO43592 962 aaKnown RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 CLCNKBP51801 687 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 DEUP1Q05D60 604 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 TAF1BQ53T94 588 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ANKRD20A2Q5SQ80 823 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ANKRD20A1Q5TYW2 823 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ANKRD20A3Q5VUR7 823 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 FYB2Q5VWT5 728 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 PAQR9Q6ZVX9 377 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 ZNF534Q76KX8 674 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 COLGALT1Q8NBJ5 622 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 GRAMD1AQ96CP6 724 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 PRR11Q96HE9 360 aaPredicted RBP10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SENP8Q96LD8 212 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 TSSK1BQ9BXA7 367 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 PIGVQ9NUD9 493 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 TMEM30AQ9NV96 361 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 SLC45A1Q9Y2W3 748 aa10.69□□□□□ -0.7
LIMA1-201ENST00000341247 XIRP2A4UGR9 3374 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 CFAP69A5D8W1 941 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 YJEFN3A6XGL0 299 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 E7ENQ6 273 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 AP1G2O75843 785 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 APOEP02649 317 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 NPR3P17342 541 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ALDH3A1P30838 453 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 SCNN1GP51170 649 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 DSTYKQ6XUX3 929 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms