RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 IGLV3-27P01718 113 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 IRF1P10914 325 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 RDXP35241 583 aaKnown RBP23.07■■□□□ 1.28
SDC3-202ENST00000339394 HDAC4P56524 1084 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 ASB2Q96Q27 587 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 TRIM10Q9UDY6 481 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 IP6K2Q9UHH9 426 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.07■■□□□ 1.28
SDC3-202ENST00000339394 DENND4AQ7Z401 1863 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 HEPACAM2A8MVW5 462 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 ANHXE9PGG2 379 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 GREM1O60565 184 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 TCF3P15923 654 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 HADHBP55084 474 aaKnown RBP23.06■■□□□ 1.28
SDC3-202ENST00000339394 RING1Q06587 406 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 PIGHQ14442 188 aaPredicted RBP23.06■■□□□ 1.28
SDC3-202ENST00000339394 ZNF77Q15935 545 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 ZC3H12AQ5D1E8 599 aaKnown RBP23.06■■□□□ 1.28
SDC3-202ENST00000339394 MTSS1LQ765P7 747 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 DDX42Q86XP3 938 aaKnown RBP eCLIP23.06■■□□□ 1.28
SDC3-202ENST00000339394 ADHFE1Q8IWW8 467 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 ZDHHC14Q8IZN3 488 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 ARFGAP1Q8N6T3 406 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 ELSPBP1Q96BH3 223 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 PLD4Q96BZ4 506 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 FCRL2Q96LA5 508 aaPredicted RBP23.06■■□□□ 1.28
SDC3-202ENST00000339394 RPP25Q9BUL9 199 aaKnown RBP23.06■■□□□ 1.28
SDC3-202ENST00000339394 OBP2AQ9NY56 170 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 PRKAG3Q9UGI9 489 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 LIMD1Q9UGP4 676 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 NUMBLQ9Y6R0 609 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 LOC730098B7Z3J9 87 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 BUB1O43683 1085 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 KLKB1P03952 638 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 BMP1P13497 986 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 DESP17661 470 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 CCR1P32246 355 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 CXCR3P49682 368 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 HTR4Q13639 388 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 SND1Q7KZF4 910 aaKnown RBP eCLIP23.06■■□□□ 1.28
SDC3-202ENST00000339394 NIPA2Q8N8Q9 360 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 RNF34Q969K3 372 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 E2F7Q96AV8 911 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 KXD1Q9BQD3 176 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.06■■□□□ 1.28
SDC3-202ENST00000339394 PYCARDQ9ULZ3 195 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 SH3BP1Q9Y3L3 701 aa23.06■■□□□ 1.28
SDC3-202ENST00000339394 ECI2O75521 394 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 ARHGAP25P42331 645 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 HARS2P49590 506 aaKnown RBP23.05■■□□□ 1.28
SDC3-202ENST00000339394 USP4Q13107 963 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 ACAP1Q15027 740 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 VITQ6UXI7 678 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 FAM131BQ86XD5 332 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 BPIFB1Q8TDL5 484 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 PLA2G2FQ9BZM2 168 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 TSGA10Q9BZW7 698 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 WDCPQ9H6R7 721 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 TMEM51Q9NW97 253 aa23.05■■□□□ 1.28
SDC3-202ENST00000339394 DENND4CQ5VZ89 1909 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 E2F8A0AVK6 867 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 MACROD2A1Z1Q3 448 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 SCAMP3O14828 347 aaKnown RBP23.04■■□□□ 1.28
SDC3-202ENST00000339394 KRT86O43790 486 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 RNF8O76064 485 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 SLC2A3P11169 496 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 CORO1AP31146 461 aaKnown RBP23.04■■□□□ 1.28
SDC3-202ENST00000339394 NAP1L1P55209 391 aaKnown RBP23.04■■□□□ 1.28
SDC3-202ENST00000339394 ZP2Q05996 745 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 MESDQ14696 234 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 PPP2R5DQ14738 602 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 DAB2IPQ5VWQ8 1189 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 NUGGCQ68CJ6 796 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 ZNF662Q6ZS27 426 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 HTR3DQ70Z44 454 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 MFSD6LQ8IWD5 586 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 UNC45BQ8IWX7 931 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 RSAD2Q8WXG1 361 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 KCNK12Q9HB15 430 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 LCMT1Q9UIC8 334 aa23.04■■□□□ 1.28
SDC3-202ENST00000339394 KCNU1A8MYU2 1149 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 LRCH4O75427 683 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 PROSCO94903 275 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 DENND1CQ8IV53 801 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 TPCN2Q8NHX9 752 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 TKTL2Q9H0I9 626 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 LZTFL1Q9NQ48 299 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 LSM7Q9UK45 103 aaKnown RBP23.03■■□□□ 1.28
SDC3-202ENST00000339394 AGO1Q9UL18 857 aaKnown RBP23.03■■□□□ 1.28
SDC3-202ENST00000339394 GUCA1BQ9UMX6 200 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 PAXBP1Q9Y5B6 917 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 DOCK8Q8NF50 2099 aa23.03■■□□□ 1.28
SDC3-202ENST00000339394 BUB1BO60566 1050 aaPredicted RBP23.02■■□□□ 1.28
SDC3-202ENST00000339394 APOEP02649 317 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 PSMC3P17980 439 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 FCHO2Q0JRZ9 810 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 BRMS1LQ5PSV4 323 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 SCYL2Q6P3W7 929 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 Q6ZNB5 142 aa23.02■■□□□ 1.28
SDC3-202ENST00000339394 CALR3Q96L12 384 aaKnown RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms