RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 HOXC11O43248 304 aaPredicted RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 LRRN2O75325 713 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 MED24O75448 989 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 AKAP3O75969 853 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 GSTM1P09488 218 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 TBXAS1P24557 533 aaPredicted RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 IVDP26440 423 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 BMPR1AP36894 532 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 PHC1P78364 1004 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 GTF2BQ00403 316 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 TAGLNQ01995 201 aaKnown RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 ITGADQ13349 1161 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 KLF1Q13351 362 aaPredicted RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 TAZQ16635 292 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 PDK4Q16654 411 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 OTOAQ7RTW8 1153 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 GPR180Q86V85 440 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 TICAM1Q8IUC6 712 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 SRRM1Q8IYB3 904 aaKnown RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 SLC25A41Q8N5S1 370 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 TRUB1Q8WWH5 349 aaKnown RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 NLRP7Q8WX94 980 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 PYDC1Q8WXC3 89 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 ATP2A3Q93084 1043 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 FBXL8Q96CD0 374 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 CNBD2Q96M20 576 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 NUDT12Q9BQG2 462 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 HERC2P3Q9BVR0 1158 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 TDRD1Q9BXT4 1180 aaKnown RBP6.86□□□□□ -1.31
ZNF540-201ENST00000316433 MROQ9BYG7 248 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 STMN3Q9NZ72 180 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 HEY2Q9UBP5 337 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 RAB26Q9ULW5 256 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 KIAA1024Q9UPX6 916 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 DAGLAQ9Y4D2 1042 aa6.86□□□□□ -1.31
ZNF540-201ENST00000316433 CAPN8A6NHC0 703 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 USP17L5A8MUK1 530 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PSMD12O00232 456 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 TAF4O00268 1085 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 CASQ2O14958 399 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 POLR1CO15160 346 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 TGDSO95455 350 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 CAPN1P07384 714 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ALOX5P09917 674 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 KRT5P13647 590 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 BTF3P20290 206 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 HADHAP40939 763 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 DLG4P78352 724 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 GCNT1Q02742 428 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 OASLQ15646 514 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PPP4R4Q6NUP7 873 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 XKR5Q6UX68 686 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 C15orf39Q6ZRI6 1047 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ZNF720Q7Z2F6 126 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 CATSPER3Q86XQ3 398 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ANKRD35Q8N283 1001 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PRELID2Q8N945 189 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 DENND1AQ8TEH3 1009 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ZNF75CPQ92670 426 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 AGPAT1Q99943 283 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 REEP2Q9BRK0 252 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 SP140LQ9H930 580 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 KANSL2Q9H9L4 492 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 VPS45Q9NRW7 570 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 FARSBQ9NSD9 589 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 SMG5Q9UPR3 1016 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 DRG1Q9Y295 367 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 RTCBQ9Y3I0 505 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PCDHB13Q9Y5F0 798 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ZHX2Q9Y6X8 837 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PHIPQ8WWQ0 1821 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ZNF487B1APH4 448 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 B2RBV5 119 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ZNF701M0R085 212 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 KLF11O14901 512 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 SNPHO15079 494 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 THAP12O43422 761 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PRLP01236 227 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PIGRP01833 764 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 KLRK1P26718 216 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 COILP38432 576 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 CENPAP49450 140 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 BMXP51813 675 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 GPC5P78333 572 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 MRPS9P82933 396 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 SMARCB1Q12824 385 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 SPARCL1Q14515 664 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 PLEKHG4Q58EX7 1191 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 TMEM179Q6ZVK1 233 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 OTOP3Q7RTS5 596 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 DEPDC4Q8N2C3 294 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 CLIP4Q8N3C7 705 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 ISOC1Q96CN7 298 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 MAP6Q96JE9 813 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 CLPTM1LQ96KA5 538 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 C7orf26Q96N11 449 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 NTPCRQ9BSD7 190 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 INTS2Q9H0H0 1204 aaKnown RBP6.85□□□□□ -1.31
ZNF540-201ENST00000316433 VPS33BQ9H267 617 aa6.85□□□□□ -1.31
ZNF540-201ENST00000316433 GOLPH3Q9H4A6 298 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms