RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SPTBN2O15020 2390 aa20.42■□□□□ 0.86
LIME1-201ENST00000309546 A0A1W2PQF6 199 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 MFAP3P55082 362 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 DAOAP59103 153 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 CAMK4Q16566 473 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 MAP7D1Q3KQU3 841 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 PKDCCQ504Y2 493 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 KIAA1211LQ6NV74 962 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 CREBRFQ8IUR6 639 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 EHBP1Q8NDI1 1231 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 IPO4Q8TEX9 1081 aaKnown RBP20.41■□□□□ 0.86
LIME1-201ENST00000309546 ZSWIM1Q9BR11 485 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 CNGB3Q9NQW8 809 aa20.41■□□□□ 0.86
LIME1-201ENST00000309546 PATE3B3GLJ2 98 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 MSI1O43347 362 aaKnown RBP20.4■□□□□ 0.86
LIME1-201ENST00000309546 HARS2P49590 506 aaKnown RBP20.4■□□□□ 0.86
LIME1-201ENST00000309546 GEN1Q17RS7 908 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 PMF1Q6P1K2 205 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 TRIML1Q8N9V2 468 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 DDI1Q8WTU0 396 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 DDX1Q92499 740 aaKnown RBP20.4■□□□□ 0.86
LIME1-201ENST00000309546 INTS2Q9H0H0 1204 aaKnown RBP20.4■□□□□ 0.86
LIME1-201ENST00000309546 ABCC13Q9NSE7 274 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 FBXO10Q9UK96 956 aa20.4■□□□□ 0.86
LIME1-201ENST00000309546 ATXN2Q99700 1313 aaKnown RBP20.39■□□□□ 0.85
LIME1-201ENST00000309546 LNP1A1A4G5 178 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 WASH3PC4AMC7 463 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 KHNYNO15037 678 aaKnown RBP20.39■□□□□ 0.85
LIME1-201ENST00000309546 FGFR1OPO95684 399 aaKnown RBP20.39■□□□□ 0.85
LIME1-201ENST00000309546 KRT5P13647 590 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 NDUFV2P19404 249 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 PTGER3P43115 390 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 MARSP56192 900 aaKnown RBP20.39■□□□□ 0.85
LIME1-201ENST00000309546 UBE2HP62256 183 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 GCNT1Q02742 428 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 STILQ15468 1287 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 TRIP4Q15650 581 aaPredicted RBP20.39■□□□□ 0.85
LIME1-201ENST00000309546 CNGA2Q16280 664 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 CPXM2Q8N436 756 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 SLC35F5Q8WV83 523 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 GABRG3Q99928 467 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 SLC6A17Q9H1V8 727 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 KIAA1468Q9P260 1216 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 SLC27A6Q9Y2P4 619 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 HBS1LQ9Y450 684 aaKnown RBP20.39■□□□□ 0.85
LIME1-201ENST00000309546 NCOR2Q9Y618 2525 aa20.39■□□□□ 0.85
LIME1-201ENST00000309546 TSPAN3O60637 253 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 RPL6Q02878 288 aaKnown RBP20.38■□□□□ 0.85
LIME1-201ENST00000309546 LYSMD4Q5XG99 296 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 ANKS1BQ7Z6G8 1248 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 SCML4Q8N228 414 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 DEFB119Q8N690 84 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 CLEC4CQ8WTT0 213 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 UCMAQ8WVF2 138 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 GOLGA1Q92805 767 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 KREMEN1Q96MU8 473 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 MIS12Q9H081 205 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 CLEC4EQ9ULY5 219 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 CYP8B1Q9UNU6 501 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 STON1Q9Y6Q2 735 aa20.38■□□□□ 0.85
LIME1-201ENST00000309546 GFRA2O00451 464 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 GABBR2O75899 941 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 ADRB1P08588 477 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 ZNF132P52740 706 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 STARD3Q14849 445 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 KIAA1324Q6UXG2 1013 aaKnown RBP20.37■□□□□ 0.85
LIME1-201ENST00000309546 FAM217AQ8IXS0 508 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 IRGQQ8WZA9 623 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 CIPCQ9C0C6 399 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 CD248Q9HCU0 757 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 UBE2TQ9NPD8 197 aaPredicted RBP20.37■□□□□ 0.85
LIME1-201ENST00000309546 RWDD2AQ9UIY3 292 aa20.37■□□□□ 0.85
LIME1-201ENST00000309546 C4orf47A7E2U8 309 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 AP5Z1O43299 807 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 ZNF217O75362 1048 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 LTFP02788 710 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 IL12RB1P42701 662 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 MPPE1Q53F39 396 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 TRIM61Q5EBN2 209 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 SLC36A4Q6YBV0 504 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 PIWIL1Q96J94 861 aaKnown RBP20.36■□□□□ 0.85
LIME1-201ENST00000309546 CRACR2AQ9BSW2 395 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 CD93Q9NPY3 652 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 ST7Q9NRC1 585 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 CHMP5Q9NZZ3 219 aa20.36■□□□□ 0.85
LIME1-201ENST00000309546 IGHV1OR15-9A0A0B4J2B8 117 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 FBXO21O94952 628 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 ITPKAP23677 461 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 HOXD9P28356 352 aaPredicted RBP20.35■□□□□ 0.85
LIME1-201ENST00000309546 IRX4P78413 519 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 ARID5AQ03989 594 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 MSANTD2Q6P1R3 559 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 SYT12Q8IV01 421 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 SORCS1Q8WY21 1168 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 MRGPRX1Q96LB2 322 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 HSFY1Q96LI6 401 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 TMEM9BQ9NQ34 198 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 TMEM74BQ9NUR3 256 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 ELOVL2Q9NXB9 296 aa20.35■□□□□ 0.85
LIME1-201ENST00000309546 THAP10Q9P2Z0 257 aaPredicted RBP20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms