RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZNF354BQ96LW1 612 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 STRBPQ96SI9 672 aaKnown RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 GPN3Q9UHW5 284 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CCL15-CCL14A0A0B4J2E2 113 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 FCGR1AP12314 374 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 GPR15P49685 360 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 SMCO1Q147U7 214 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CCL15Q16663 113 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 GLT1D1Q96MS3 346 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TEX13BQ9BXU2 312 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TOR4AQ9NXH8 423 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 MINPP1Q9UNW1 487 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 MAGEA13PA6NCF6 341 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CTXN3Q4LDR2 81 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 EPC2Q52LR7 807 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CELF4Q9BZC1 486 aaKnown RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CD209Q9NNX6 404 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 UBA2Q9UBT2 640 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CDC42BPGQ6DT37 1551 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 BAZ2BQ9UIF8 2168 aaKnown RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TRIM64A6NGJ6 449 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 COMTP21964 271 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TRAF3Q13114 568 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 XRCC4Q13426 336 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 RIBC1Q8N443 379 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 SEPT1Q8WYJ6 367 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 STAP2Q9UGK3 403 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 LOC100506127A0A0U1RQW1 187 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TPP2P29144 1249 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 EPHA7Q15375 998 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 FEZF2Q8TBJ5 459 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CENPIQ92674 756 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 GMCL1Q96IK5 515 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 HIC2Q96JB3 615 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 C1QTNF7Q9BXJ2 289 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 BATF3Q9NR55 127 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 PDP2Q9P2J9 529 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 VPS4BO75351 444 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 PPP1R37O75864 691 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 ATP5F1P24539 256 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 KLRC2P26717 231 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 AGKQ53H12 422 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 BARGINQ6ZT62 677 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TRAPPC11Q7Z392 1133 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 ITIH5Q86UX2 942 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 TMEM132CQ8N3T6 1108 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 FNDC5Q8NAU1 212 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 CPB2Q96IY4 423 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 LIN7AO14910 233 aaPredicted RBP11.66□□□□□ -0.54
PTPN4-201ENST00000263708 FDX1P10109 184 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 RFC5P40937 340 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 STAT5AP42229 794 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 WDR60Q8WVS4 1066 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 NEK6Q9HC98 313 aa11.66□□□□□ -0.54
PTPN4-201ENST00000263708 PDXKO00764 312 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 STX11O75558 287 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 RGS20O76081 388 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 CSHL1Q14406 222 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 GRB14Q14449 540 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 TBCELQ5QJ74 424 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ZBTB49Q6ZSB9 765 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ZNF605Q86T29 641 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 CAMK1DQ8IU85 385 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 GUF1Q8N442 669 aaKnown RBP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 REPS1Q96D71 796 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 PTGES3LE9PB15 166 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 EIF3HO15372 352 aaKnown RBP eCLIP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 TNFRSF21O75509 655 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 CASP4P49662 377 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SLFN11Q7Z7L1 901 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SDR42E2A6NKP2 422 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 A8MX80 341 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 MCIDASD6RGH6 385 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 GPR182O15218 404 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 MPOP05164 745 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 RAPSNQ13702 412 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 LPCAT2Q7L5N7 544 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SVOPQ8N4V2 548 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 OR52L1Q8NGH7 329 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 PIGKQ92643 395 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 PHF21BQ96EK2 531 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SNX12Q9UMY4 172 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 A0A088AWK7 358 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ZNF10P21506 573 aaPredicted RBP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 RAD23AP54725 363 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 C3orf20Q8ND61 904 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 KCNB2Q92953 911 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 CNPPD1Q9BV87 410 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 UBP1Q9NZI7 540 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 HEY2Q9UBP5 337 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SUCOQ9UBS9 1254 aaKnown RBP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 IGSF9BQ9UPX0 1349 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 CYB561D2O14569 222 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 OR10H2O60403 315 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 LYNP07948 512 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ACO1P21399 889 aaKnown RBP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 LSP1P33241 339 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SLC18A3Q16572 532 aa11.65□□□□□ -0.54
PTPN4-201ENST00000263708 SETMARQ53H47 684 aaPredicted RBP11.65□□□□□ -0.54
PTPN4-201ENST00000263708 ADGRF2Q8IZF7 708 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms