RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CDH16O75309 829 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ADH1AP07327 375 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 RARGP13631 454 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 RFC2P35250 354 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ANKRD20A8PQ5CZ79 823 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 OSTM1Q86WC4 334 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 SRRM1Q8IYB3 904 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 FUKQ8N0W3 1084 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 GSDMBQ8TAX9 411 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 SCYL1Q96KG9 808 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 PPP1R10Q96QC0 940 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ATAD5Q96QE3 1844 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 BRD8Q9H0E9 1235 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 NAALADL1Q9UQQ1 740 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 JCHAINP01591 159 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 HECTD3Q5T447 861 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 NAPEPLDQ6IQ20 393 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 KCNT2Q6UVM3 1135 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 LRRC8CQ8TDW0 803 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 KCNN1Q92952 543 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ARHGEF2Q92974 986 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 ZIM3Q96PE6 472 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 LPIN3Q9BQK8 851 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 FUT8Q9BYC5 575 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 SMPD4Q9NXE4 827 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 SHOC2Q9UQ13 582 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 CNTN6Q9UQ52 1028 aa11.98□□□□□ -0.49
VPS4A-201ENST00000254950 DRG1Q9Y295 367 aaKnown RBP11.98□□□□□ -0.49
VPS4A-201ENST00000254950 PTGESO14684 152 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 ANXA9O76027 345 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 PMLP29590 882 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 HSD17B3P37058 310 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 AVPR1AP37288 418 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 RPL21P46778 160 aaKnown RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 SLC5A3P53794 718 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 MTM1Q13496 603 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 CDH18Q13634 790 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 PTK6Q13882 451 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 TMEM110Q86TL2 294 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 EIF1ADQ8N9N8 165 aaKnown RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 BCAS4Q8TDM0 211 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 DDX23Q9BUQ8 820 aaKnown RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 HACD1B0YJ81 288 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 ACRP10323 421 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 ETFBP38117 255 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 PLA2G4AP47712 749 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 DAOAP59103 153 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 SLC29A2Q14542 456 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 ACCSLQ4AC99 568 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 PPM1LQ5SGD2 360 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 RPAINQ86UA6 219 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 CAVIN3Q969G5 261 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 CABS1Q96KC9 395 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 KCNK16Q96T55 309 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 NRDE2Q9H7Z3 1164 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 PPCSQ9HAB8 311 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 PCDH18Q9HCL0 1135 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 GDF3Q9NR23 364 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 H0Y626 953 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 DNALI1O14645 258 aaPredicted RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 LIASO43766 372 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 SCNN1AP37088 669 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 LBX1P52954 281 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 AIF1P55008 147 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 MMRN1Q13201 1228 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 TAF5Q15542 800 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 TTC19Q6DKK2 380 aaPredicted RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 MRPL10Q7Z7H8 261 aaKnown RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 IPMKQ8NFU5 416 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 NDRG1Q92597 394 aaKnown RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 RMDN1Q96DB5 314 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 CELF6Q96J87 481 aaKnown RBP11.97□□□□□ -0.49
VPS4A-201ENST00000254950 VPS39Q96JC1 886 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 TMEM175Q9BSA9 504 aa11.97□□□□□ -0.49
VPS4A-201ENST00000254950 MEIS3P2A8K0S8 358 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 GIPC1O14908 333 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 TROVE2P10155 538 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS4A-201ENST00000254950 CDH5P33151 784 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-201ENST00000254950 ADRA1BP35368 520 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 PRAMEP78395 509 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 SLC39A5Q6ZMH5 540 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 CLEC20AQ6ZU45 233 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 HERC6Q8IVU3 1022 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 C7orf61Q8IZ16 206 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 HTR3CQ8WXA8 447 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 ATXN3LQ9H3M9 355 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 ELAC1Q9H777 363 aaKnown RBP11.96□□□□□ -0.49
VPS4A-201ENST00000254950 SAE1Q9UBE0 346 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-201ENST00000254950 STK39Q9UEW8 545 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 GEN1Q17RS7 908 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 BRMS1LQ5PSV4 323 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 C3orf62Q6ZUJ4 267 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 KDELC2Q7Z4H8 507 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 OR2W6PQ8NHA6 318 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 SLC35F5Q8WV83 523 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 NUDCD1Q96RS6 583 aa11.96□□□□□ -0.49
VPS4A-201ENST00000254950 ROPN1BQ9BZX4 212 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-201ENST00000254950 ROPN1Q9HAT0 212 aaPredicted RBP11.96□□□□□ -0.49
VPS4A-201ENST00000254950 ZFATQ9P243 1243 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms