RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MRPS9P82933 396 aaKnown RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 ZACNQ401N2 412 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 AAGABQ6PD74 315 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 DRICH1Q6PGQ1 229 aaPredicted RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 UNC5AQ6ZN44 842 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 BHLHE22Q8NFJ8 381 aaPredicted RBP14.83□□□□□ -0.04
SDC1-201ENST00000254351 GMCL1Q96IK5 515 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 PPCSQ9HAB8 311 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.83□□□□□ -0.04
SDC1-201ENST00000254351 ZNF180Q9UJW8 692 aa14.83□□□□□ -0.04
SDC1-201ENST00000254351 C3orf70A6NLC5 250 aaPredicted RBP14.82□□□□□ -0.04
SDC1-201ENST00000254351 PPP2R5DQ14738 602 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 C15orf59Q2T9L4 293 aaPredicted RBP14.82□□□□□ -0.04
SDC1-201ENST00000254351 LGSNQ5TDP6 509 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 SWSAP1Q6NVH7 229 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 DENND1BQ6P3S1 775 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 ENOSF1Q7L5Y1 443 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 RNF168Q8IYW5 571 aaPredicted RBP14.82□□□□□ -0.04
SDC1-201ENST00000254351 WDTC1Q8N5D0 677 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 TMC2Q8TDI7 906 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 PPP4R1Q8TF05 950 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 SLC16A10Q8TF71 515 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 TMA16Q96EY4 203 aaKnown RBP14.82□□□□□ -0.04
SDC1-201ENST00000254351 MRPL11Q9Y3B7 192 aaKnown RBP14.82□□□□□ -0.04
SDC1-201ENST00000254351 FIS1Q9Y3D6 152 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 KRT38O76015 456 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 KRT19P08727 400 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 P4HA1P13674 534 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 PTPN1P18031 435 aaKnown RBP14.82□□□□□ -0.04
SDC1-201ENST00000254351 AOC1P19801 751 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 MIPP30301 263 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 TNFSF9P41273 254 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 THOP1P52888 689 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 CDH8P55286 799 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 MYL6P60660 151 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 Q3C1V9 767 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 C1QTNF12Q5T7M4 302 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 ZNF554Q86TJ5 538 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 ZNF677Q86XU0 584 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 SNX31Q8N9S9 440 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 TAAR1Q96RJ0 339 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 MTMR12Q9C0I1 747 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 CLEC11AQ9Y240 323 aa14.82□□□□□ -0.04
SDC1-201ENST00000254351 CCDC78A2IDD5 438 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 E7ESA3 106 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 TPP1O14773 563 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 C4BPAP04003 597 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 MAPTP10636 758 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 EMP3P54852 163 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 SESN2P58004 480 aaPredicted RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 SLC9B1Q4ZJI4 515 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 TEDDM1Q5T9Z0 273 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 CMC1Q7Z7K0 106 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 RTKN2Q8IZC4 609 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 LILRA2Q8N149 483 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 MYO1HQ8N1T3 1032 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 RIT2Q99578 217 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 PKP2Q99959 881 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 MSTO1Q9BUK6 570 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 MAGEB5Q9BZ81 275 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 IMPG2Q9BZV3 1241 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 HAPLN2Q9GZV7 340 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 EHMT1Q9H9B1 1298 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 RAVER2Q9HCJ3 691 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 AGO4Q9HCK5 861 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 ZDHHC7Q9NXF8 308 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 POLIQ9UNA4 740 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 ATP9BO43861 1147 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 BBOX1O75936 387 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 FAM58BPP0C7Q3 252 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 COX4I1P13073 169 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 SOX11P35716 441 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 TUBB3Q13509 450 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 PIGHQ14442 188 aaPredicted RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 LPIN1Q14693 890 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 PTPN20Q4JDL3 420 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 RARS2Q5T160 578 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 TMEM198Q66K66 360 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 LPCAT2Q7L5N7 544 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 TAS1R3Q7RTX0 852 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 SNX32Q86XE0 403 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 TMEM35BQ8NCS4 154 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 WRNIP1Q96S55 665 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 FBXO40Q9UH90 709 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 MYO18AQ92614 2054 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 PDLIM1O00151 329 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 CCNT2O60583 730 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 CCDC166P0CW27 439 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 MAGEA8P43361 318 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 IGBP1P78318 339 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 TFAMQ00059 246 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 MS4A2Q01362 244 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 HADHQ16836 314 aaKnown RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 HSP90AA5PQ58FG0 334 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 SPNS2Q8IVW8 549 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 UPF1Q92900 1129 aaKnown RBP eCLIP14.81□□□□□ -0.043e-15■■■■■ 66.8
SDC1-201ENST00000254351 EME1Q96AY2 570 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 OR52B2Q96RD2 323 aa14.81□□□□□ -0.04
SDC1-201ENST00000254351 POLR3FQ9H1D9 316 aaPredicted RBP14.81□□□□□ -0.04
SDC1-201ENST00000254351 DNAJB4Q9UDY4 337 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms