RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 DEFB106AQ8N104 65 aa15.12■□□□□ 0.01
CNOT3-201ENST00000221232 PIN4Q9Y237 131 aaKnown RBP15.12■□□□□ 0.01
CNOT3-201ENST00000221232 ANK1P16157 1881 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 I3L4J1 428 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 USP12O75317 370 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 DESP17661 470 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 CALB2P22676 271 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 ALDH18A1P54886 795 aaKnown RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 KPNB1Q14974 876 aaKnown RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 LGSNQ5TDP6 509 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 C9orf57Q5W0N0 161 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 BEST2Q8NFU1 509 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 PPP1R14CQ8TAE6 165 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 MCUR1Q96AQ8 359 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 OXNAD1Q96HP4 312 aaPredicted RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 EBNA1BP2Q99848 306 aaKnown RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 SNX25Q9H3E2 840 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 MYO18AQ92614 2054 aaKnown RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 WDR90Q96KV7 1748 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 TRIP11Q15643 1979 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 PDHXO00330 501 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 LYPLA1O75608 230 aaPredicted RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 BEST1O76090 585 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 TPBGLP0DKB5 382 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 ABCG1P45844 678 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 AQP5P55064 265 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 HSF5Q4G112 596 aaPredicted RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 CDKL3Q8IVW4 592 aaPredicted RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 COLGALT1Q8NBJ5 622 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 STK32AQ8WU08 396 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 DNAJB3Q8WWF6 145 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 BTBD10Q9BSF8 475 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 PHACTR1Q9C0D0 580 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 GEMIN8Q9NWZ8 242 aaKnown RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 SLC5A4Q9NY91 659 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 CNTN3Q9P232 1028 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.11■□□□□ 0.01
CNOT3-201ENST00000221232 BRCA2P51587 3418 aa15.11■□□□□ 0.01
CNOT3-201ENST00000221232 GSC2O15499 205 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 KCNA4P22459 653 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 MGAT1P26572 445 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TKTP29401 623 aaKnown RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SULT1E1P49888 294 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 POU5F1BQ06416 359 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 ADIGQ0VDE8 80 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 NCBP2-AS2Q69YL0 99 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TMEM40Q8WWA1 233 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 USP6NLQ92738 828 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 ZNF670Q9BS34 389 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TAS2R1Q9NYW7 299 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 MTO1Q9Y2Z2 717 aaKnown RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 CCDC78A2IDD5 438 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 KCNK1O00180 336 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 CCDC22O60826 627 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 KRT38O76015 456 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 PDHA1P08559 390 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 MLH1P40692 756 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 RPL10AP62906 217 aaKnown RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 PPM1JQ5JR12 505 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SLC27A1Q6PCB7 646 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 GSDMBQ8TAX9 411 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 WDR60Q8WVS4 1066 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TEKT4Q8WW24 435 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 CLPTM1LQ96KA5 538 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SNX27Q96L92 541 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 EBF4Q9BQW3 602 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 GCOM2Q9BZD3 368 aaPredicted RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 PSAT1Q9Y617 370 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 KPNA7A9QM74 516 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 B2RBV5 119 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 H3BRJ5 948 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 DPYSL4O14531 572 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 MDM4O15151 490 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 MFSD11O43934 449 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SPAG6O75602 509 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 KRT36O76013 467 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SOX4Q06945 474 aaPredicted RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SNAPC2Q13487 334 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 CCDC6Q16204 474 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 NBPF20Q3BBV1 942 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 FBXO47Q5MNV8 452 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 BZW1Q7L1Q6 419 aaKnown RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TREML1Q86YW5 311 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 IFNLR1Q8IU57 520 aaPredicted RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 HACE1Q8IYU2 909 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TFB1MQ8WVM0 346 aaKnown RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 KBTBD7Q8WVZ9 684 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 HTR3CQ8WXA8 447 aa15.1■□□□□ 0.01
CNOT3-201ENST00000221232 PTCD3Q96EY7 689 aaKnown RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.1■□□□□ 0.013e-6■■■■□ 21.2
CNOT3-201ENST00000221232 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 TIMM13Q9Y5L4 95 aaPredicted RBP15.1■□□□□ 0.01
CNOT3-201ENST00000221232 SMIM28A0A1B0GU29 152 aa15.09■□□□□ 0.01
CNOT3-201ENST00000221232 MMP3P08254 477 aa15.09■□□□□ 0.01
CNOT3-201ENST00000221232 ERVK-10P10266 1014 aa15.09■□□□□ 0.01
CNOT3-201ENST00000221232 PRKCHP24723 683 aa15.09■□□□□ 0.01
CNOT3-201ENST00000221232 ARL4AP40617 200 aa15.09■□□□□ 0.01
CNOT3-201ENST00000221232 PTDSS1P48651 473 aaKnown RBP15.09■□□□□ 0.01
CNOT3-201ENST00000221232 BST2Q10589 180 aaKnown RBP15.09■□□□□ 0.01
CNOT3-201ENST00000221232 SYPL2Q5VXT5 272 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms