RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ZNF276Q8N554 614 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 KIAA1958Q8N8K9 716 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 PJA1Q8NG27 643 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 IRGQQ8WZA9 623 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 DDX1Q92499 740 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 FAM3CQ92520 227 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 EDEM1Q92611 657 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 CDK5RAP1Q96SZ6 601 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 CHP1Q99653 195 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 AGPAT1Q99943 283 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 SLC4A5Q9BY07 1137 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 LHX5Q9H2C1 402 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 DEF6Q9H4E7 631 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 C8orf33Q9H7E9 229 aaPredicted RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 ECT2Q9H8V3 914 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 INTUQ9ULD6 942 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 NDRG2Q9UN36 371 aaKnown RBP10.32□□□□□ -0.76
CLN3-261ENST00000637686 SIT1Q9Y3P8 196 aa10.32□□□□□ -0.76
CLN3-261ENST00000637686 E2F8A0AVK6 867 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 SOWAHDA6NJG2 315 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 SLC9A3R1O14745 358 aaPredicted RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 ZSCAN12O43309 604 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 AKR1B10O60218 316 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 LSM8O95777 96 aaKnown RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 CCDC175P0C221 793 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 COL9A1P20849 921 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 CTHP32929 405 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 CDH5P33151 784 aaPredicted RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 EIF4A3P38919 411 aaKnown RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 PDCLQ13371 301 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 SPA17Q15506 151 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 TAF3Q5VWG9 929 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 TXNDC11Q6PKC3 985 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 RAD9BQ6WBX8 426 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 ZNF571Q7Z3V5 609 aaPredicted RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 TMEM110Q86TL2 294 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 NOP9Q86U38 636 aaKnown RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 RALGPS2Q86X27 583 aaPredicted RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 BBS7Q8IWZ6 715 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 ADGRG2Q8IZP9 1017 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 CPA6Q8N4T0 437 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 C1orf131Q8NDD1 294 aaKnown RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 SLC30A5Q8TAD4 765 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 KIAA1524Q8TCG1 905 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 STK32AQ8WU08 396 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 ATP2A3Q93084 1043 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 MSANTD3Q96H12 275 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 PPP1R13BQ96KQ4 1090 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 CALR3Q96L12 384 aaKnown RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 PDCL3Q9H2J4 239 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 ABCC13Q9NSE7 274 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 MARCH2Q9P0N8 246 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 TJP2Q9UDY2 1190 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 RAPGEFL1Q9UHV5 662 aa10.31□□□□□ -0.76
CLN3-261ENST00000637686 MRPS17Q9Y2R5 130 aaKnown RBP10.31□□□□□ -0.76
CLN3-261ENST00000637686 KMT2EQ8IZD2 1858 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 SLC12A8A0AV02 714 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 FAM170AA1A519 330 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 PAPSS1O43252 624 aaPredicted RBP10.3□□□□□ -0.76
CLN3-261ENST00000637686 GREM1O60565 184 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 STC2O76061 302 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 NFATC1O95644 943 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 LTFP02788 710 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 HMBSP08397 361 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 MMEP08473 750 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 TNFAIP3P21580 790 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 GJA4P35212 333 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 COG7P83436 770 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 NR1H3Q13133 447 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 PON2Q15165 354 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 DHCR24Q15392 516 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 HTR3DQ70Z44 454 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 CCDC105Q8IYK2 499 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 ZNF687Q8N1G0 1237 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 TMEM35BQ8NCS4 154 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 OLIG1Q8TAK6 271 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 RNF139Q8WU17 664 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 SLC20A1Q8WUM9 679 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 UBE2Q2Q8WVN8 375 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 GOLGA1Q92805 767 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 CHFRQ96EP1 664 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 VCPIP1Q96JH7 1222 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 NOX5Q96PH1 765 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 CPXM1Q96SM3 734 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 NELL2Q99435 816 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 OSBPL6Q9BZF3 934 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 TSGA10Q9BZW7 698 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 ISCUQ9H1K1 167 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 OLA1Q9NTK5 396 aaKnown RBP10.3□□□□□ -0.76
CLN3-261ENST00000637686 TBC1D14Q9P2M4 693 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 SFMBT1Q9UHJ3 866 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 STRIP2Q9ULQ0 834 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 CEP83Q9Y592 693 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 ADGRG1Q9Y653 693 aa10.3□□□□□ -0.76
CLN3-261ENST00000637686 A0A087X0T9 212 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 BTNL10A8MVZ5 291 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 DDX3XO00571 662 aaKnown RBP eCLIP10.29□□□□□ -0.76
CLN3-261ENST00000637686 NCAM2O15394 837 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 PJA2O43164 708 aa10.29□□□□□ -0.76
CLN3-261ENST00000637686 TUBB4AP04350 444 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms