RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ATAD3AQ9NVI7 634 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ANO10Q9NW15 660 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 THG1LQ9NWX6 298 aaKnown RBP3.18□□□□□ -1.9
VIM-210ENST00000637053 SAMD15Q9P1V8 674 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 C5AR2Q9P296 337 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 DNAJB9Q9UBS3 223 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 RCOR1Q9UKL0 485 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 BAG5Q9UL15 447 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PSME2Q9UL46 239 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 C15orf41Q9Y2V0 281 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 ASB3Q9Y575 518 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 PCDHGA1Q9Y5H4 931 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 NPFFR2Q9Y5X5 522 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 CAPN7Q9Y6W3 813 aa3.18□□□□□ -1.9
VIM-210ENST00000637053 CCDC151A5D8V7 595 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 TRIM43BA6NCK2 446 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 A8MXE2 369 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 PRR5-ARHGAP8B1AHC4 643 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 TTI1O43156 1089 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 CA12O43570 354 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 EXTL3O43909 919 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 GAS7O60861 476 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 PPM1BO75688 479 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 BCAS2O75934 225 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 FLOT1O75955 427 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 REC8O95072 547 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ATE1O95260 518 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 PNPP00491 289 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 HNRNPA1P09651 372 aaKnown RBP eCLIP3.17□□□□□ -1.9
VIM-210ENST00000637053 PRR35P0CG20 571 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 TPBGLP0DKB5 382 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 GAAP10253 952 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 XRCC6P12956 609 aaKnown RBP eCLIP3.17□□□□□ -1.9
VIM-210ENST00000637053 MYF5P13349 255 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 CCNA2P20248 432 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 EEF1GP26641 437 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 HTR1BP28222 390 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ADRA1BP35368 520 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 MAP2K2P36507 400 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 LONP1P36776 959 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 STAT5AP42229 794 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 GRIA2P42262 883 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 GPR3P46089 330 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 CAMLGP49069 296 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 DHPSP49366 369 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 NT5C2P49902 561 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 SCNN1GP51170 649 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 CCR5P51681 352 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 LUMP51884 338 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 GBX2P52951 348 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 CARD18P57730 90 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ARPC4P59998 168 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 B2MP61769 119 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ARF5P84085 180 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 PRR5P85299 388 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 MAP3K12Q12852 859 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 RPA4Q13156 261 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 DHX34Q14147 1143 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 BTG3Q14201 252 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 ICAM4Q14773 271 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 MORF4L2Q15014 288 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ERCC6LQ2NKX8 1250 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 SMU1Q2TAY7 513 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 LRRFIP1Q32MZ4 808 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 ADCK5Q3MIX3 580 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 DUSP28Q4G0W2 176 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 SLC39A12Q504Y0 691 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 XKR3Q5GH77 459 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 OR7E24Q6IFN5 339 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 DENND5AQ6IQ26 1287 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 C8orf74Q6P047 294 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ZCCHC12Q6PEW1 402 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 KLHDC10Q6PID8 442 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 C6orf89Q6UWU4 347 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ISLR2Q6UXK2 745 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 UNC5AQ6ZN44 842 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 USP45Q70EL2 814 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 MARK2Q7KZI7 788 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 MAMDC2Q7Z304 686 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 RABEPKQ7Z6M1 372 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 MRPL10Q7Z7H8 261 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 GPR149Q86SP6 731 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 GRAMD2AQ8IUY3 354 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 UNC5CLQ8IV45 518 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 CD302Q8IX05 232 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 SRBD1Q8N5C6 995 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 RNF10Q8N5U6 811 aaKnown RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 EFHBQ8N7U6 833 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 RNF152Q8N8N0 203 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 XXYLT1Q8NBI6 393 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 KCNH5Q8NCM2 988 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 C7orf57Q8NEG2 295 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 NPLOC4Q8TAT6 608 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 METTL21AQ8WXB1 218 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 ANKS1AQ92625 1134 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 PPP1R14AQ96A00 147 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 VPS33AQ96AX1 596 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 TRIM43Q96BQ3 446 aaPredicted RBP3.17□□□□□ -1.9
VIM-210ENST00000637053 SGK3Q96BR1 496 aa3.17□□□□□ -1.9
VIM-210ENST00000637053 INTS12Q96CB8 462 aaKnown RBP3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms