RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SPATA18Q8TC71 538 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 JADE3Q92613 823 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 KCNN1Q92952 543 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PBXIP1Q96AQ6 731 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 E2F7Q96AV8 911 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 OXNAD1Q96HP4 312 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FAM161BQ96MY7 647 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 NR1H4Q96RI1 486 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TBCBQ99426 244 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SH2D3AQ9BRG2 576 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TARS2Q9BW92 718 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM39BQ9GZU3 492 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SLC24A3Q9HC58 644 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 HESX1Q9UBX0 185 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TAGLN3Q9UI15 199 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF180Q9UJW8 692 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 POLIQ9UNA4 740 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CHMP2BQ9UQN3 213 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 APOBEC2Q9Y235 224 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 A6NJR5 290 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 KLF11O14901 512 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 GALR2O43603 387 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PEX11AO75192 247 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 STBD1O95210 358 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PSMG1O95456 288 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CBX6O95503 412 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TPBGLP0DKB5 382 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ACO1P21399 889 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 GPD1P21695 349 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 KDELR1P24390 212 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ADRA1DP25100 572 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PTDSS1P48651 473 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CDH6P55285 790 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 BCAR1P56945 870 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PTPN11Q06124 597 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 MPP2Q14168 576 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 OASLQ15646 514 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SH2D4BQ5SQS7 431 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 HP1BP3Q5SSJ5 553 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 C4orf50Q6ZRC1 276 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PDZD4Q76G19 769 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 NET1Q7Z628 596 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SDCCAG8Q86SQ7 713 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SESTD1Q86VW0 696 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CPNE8Q86YQ8 564 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 MFN1Q8IWA4 741 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ADHFE1Q8IWW8 467 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF276Q8N554 614 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ZSWIM2Q8NEG5 633 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 DNERQ8NFT8 737 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 DEPDC1BQ8WUY9 529 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 BSNDQ8WZ55 320 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 HSPH1Q92598 858 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM143Q96AN5 459 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SHDQ96IW2 340 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CDCA3Q99618 268 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CNPY3Q9BT09 278 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TLE6Q9H808 572 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 COL20A1Q9P218 1284 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TRIM33Q9UPN9 1127 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FARP1Q9Y4F1 1045 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ARHGAP42A6NI28 874 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 VWA5AO00534 786 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FCHO1O14526 889 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 BIRC5O15392 142 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TYROBPO43914 113 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 MAGEC1O60732 1142 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 STAMBPO95630 424 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 RB1P06400 928 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 PDHA1P08559 390 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 MX2P20592 715 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 CDH5P33151 784 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 RPL22P35268 128 aaKnown RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 NRLP54845 237 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 AP1B1Q10567 949 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 STX3Q13277 289 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 MTMR2Q13614 643 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 HIC1Q14526 733 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SLC1A5Q15758 541 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FAM102AQ5T9C2 384 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-214ENST00000637038 C1orf146Q5VVC0 180 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SNX30Q5VWJ9 437 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FAM91A1Q658Y4 838 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SPOPLQ6IQ16 392 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SLC39A4Q6P5W5 647 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SCARA5Q6ZMJ2 495 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 LRRC74BQ6ZQY2 392 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ARCQ7LC44 396 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 TTC30AQ86WT1 665 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 BANPQ8N9N5 519 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FAM71DQ8N9W8 422 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SHCBP1Q8NEM2 672 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SLC44A1Q8WWI5 657 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FGD4Q96M96 766 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 C7orf26Q96N11 449 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF570Q96NI8 536 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 FAM111AQ96PZ2 611 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 SERPINI1Q99574 410 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 NAT9Q9BTE0 207 aa4.12□□□□□ -1.75
SCN1A-214ENST00000637038 GPAMQ9HCL2 828 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms