RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 GLDCP23378 1020 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 PRKCHP24723 683 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 ABCD1P33897 745 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 ZNF132P52740 706 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 CDH8P55286 799 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 POSTNQ15063 836 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 GEN1Q17RS7 908 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 BROXQ5VW32 411 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 SNX30Q5VWJ9 437 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 ADAT2Q7Z6V5 191 aaKnown RBP15.38■□□□□ 0.05
CLN3-249ENST00000636685 EID2Q8N6I1 236 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 ZNF248Q8NDW4 579 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 MED8Q96G25 268 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 B3GNT5Q9BYG0 378 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 ELOVL4Q9GZR5 314 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 DPEP3Q9H4B8 488 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 IL17BQ9UHF5 180 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 FBXO10Q9UK96 956 aa15.38■□□□□ 0.05
CLN3-249ENST00000636685 TBCAO75347 108 aaKnown RBP15.37■□□□□ 0.05
CLN3-249ENST00000636685 FSBPO95073 299 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 TBX18O95935 607 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 ITGAVP06756 1048 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 TMEM191BP0C7N4 346 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 ZDHHC11BP0C7U3 371 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 PTPN1P18031 435 aaKnown RBP15.37■□□□□ 0.05
CLN3-249ENST00000636685 GNL1P36915 607 aaPredicted RBP15.37■□□□□ 0.05
CLN3-249ENST00000636685 TUBP50607 506 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 MCM6Q14566 821 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 ZNF234Q14588 700 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 SHBQ15464 509 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 TSC1Q92574 1164 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 KCNK16Q96T55 309 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 MMS19Q96T76 1030 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 ORAI3Q9BRQ5 295 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 KLF16Q9BXK1 252 aaPredicted RBP15.37■□□□□ 0.05
CLN3-249ENST00000636685 ST6GALNAC4Q9H4F1 302 aa15.37■□□□□ 0.05
CLN3-249ENST00000636685 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.37■□□□□ 0.05
CLN3-249ENST00000636685 VWA3AA6NCI4 1184 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 DFNA5O60443 496 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 TLR5O60602 858 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 TSPAN3O60637 253 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 SEMA4FO95754 770 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 EPHX1P07099 455 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 ABCB4P21439 1286 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 CD27P26842 260 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 MFAP3P55082 362 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 UCNP55089 124 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 C21orf59P57076 290 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 PCBP4P57723 403 aaKnown RBP15.36■□□□□ 0.05
CLN3-249ENST00000636685 KCNA1Q09470 495 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 KRI1Q8N9T8 703 aaKnown RBP15.36■□□□□ 0.05
CLN3-249ENST00000636685 OR5B17Q8NGF7 314 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 SAP25Q8TEE9 199 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 NOC3LQ8WTT2 800 aaKnown RBP15.36■□□□□ 0.05
CLN3-249ENST00000636685 ELF4Q99607 663 aaPredicted RBP15.36■□□□□ 0.05
CLN3-249ENST00000636685 LHX5Q9H2C1 402 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 SNX25Q9H3E2 840 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.36■□□□□ 0.05
CLN3-249ENST00000636685 BLOC1S4Q9NUP1 217 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 NXF1Q9UBU9 619 aaKnown RBP15.36■□□□□ 0.05
CLN3-249ENST00000636685 CLCA2Q9UQC9 943 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 SLC27A6Q9Y2P4 619 aa15.36■□□□□ 0.05
CLN3-249ENST00000636685 R3HCC1Q9Y3T6 440 aaKnown RBP15.36■□□□□ 0.05
CLN3-249ENST00000636685 NPC1O15118 1278 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 NTRK1P04629 796 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 SLC5A3P53794 718 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 ZNF720Q7Z2F6 126 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 OR6B3Q8NGW1 331 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 UCMAQ8WVF2 138 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 SORCS1Q8WY21 1168 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 ANKRD36BP1Q96IX9 119 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 HIC2Q96JB3 615 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 INTS13Q9NVM9 706 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 IL37Q9NZH6 218 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 LSM7Q9UK45 103 aaKnown RBP15.35■□□□□ 0.05
CLN3-249ENST00000636685 NBPF19A0A087WUL8 3843 aa15.35■□□□□ 0.05
CLN3-249ENST00000636685 VILLO15195 856 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 DDIT3P35638 169 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 INSM1Q01101 510 aaPredicted RBP15.34■□□□□ 0.05
CLN3-249ENST00000636685 KIAA1614Q5VZ46 1190 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 KDM7AQ6ZMT4 941 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 SFR1Q86XK3 245 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 DHX40Q8IX18 779 aaKnown RBP15.34■□□□□ 0.05
CLN3-249ENST00000636685 DCBLD1Q8N8Z6 715 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 OR2T3Q8NH03 318 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 SLC6A18Q96N87 628 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLN3-249ENST00000636685 ACE2Q9BYF1 805 aaPredicted RBP15.34■□□□□ 0.05
CLN3-249ENST00000636685 ELOVL2Q9NXB9 296 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 PCDHB1Q9Y5F3 818 aa15.34■□□□□ 0.05
CLN3-249ENST00000636685 SPTAN1Q13813 2472 aaKnown RBP15.33■□□□□ 0.04
CLN3-249ENST00000636685 KLK10O43240 276 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 PPP1R37O75864 691 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 WNT1P04628 370 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 BCAT1P54687 386 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 VAC14Q08AM6 782 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 CCDC83Q8IWF9 413 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 CACTIN-AS1Q8N1I8 211 aa15.33■□□□□ 0.04
CLN3-249ENST00000636685 RBBP8NLQ8NC74 664 aaPredicted RBP15.33■□□□□ 0.04
CLN3-249ENST00000636685 B3GALNT2Q8NCR0 500 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms