RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DENND5BQ6ZUT9 1274 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 ZNF365Q70YC5 407 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 ADAT2Q7Z6V5 191 aaKnown RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 ALLCQ8N6M5 410 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 SLC7A14Q8TBB6 771 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 DQX1Q8TE96 717 aaKnown RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 RIN2Q8WYP3 895 aaPredicted RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 HERVK_113Q902F9 699 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 VN1R3Q9BXE9 311 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 HEMGNQ9BXL5 484 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 MAK16Q9BXY0 300 aaKnown RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 FOXP3Q9BZS1 431 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 PHACTR1Q9C0D0 580 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 EPC1Q9H2F5 836 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 PCDH9Q9HC56 1237 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 WDR6Q9NNW5 1121 aaKnown RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 TLR8Q9NR97 1041 aaKnown RBP10.99□□□□□ -0.65
CLN3-248ENST00000636355 DDIT4Q9NX09 232 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 CDY1Q9Y6F8 540 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 CLUHO75153 1309 aa10.99□□□□□ -0.65
CLN3-248ENST00000636355 DOCK4Q8N1I0 1966 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 WDR27A2RRH5 827 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 MAP2K7O14733 419 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ABLIM3O94929 683 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 KRT10P13645 584 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ATF2P15336 505 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 YWHAQP27348 245 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ADRA1BP35368 520 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 TUBP50607 506 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 KPNA1P52294 538 aaPredicted RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 NRG1Q02297 640 aaPredicted RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 CALCOCO2Q13137 446 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 SEMA3BQ13214 749 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 PLD1Q13393 1074 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 RAB33AQ14088 237 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 HLTFQ14527 1009 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLN3-248ENST00000636355 ANKRD20A8PQ5CZ79 823 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 SYPL2Q5VXT5 272 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 BTBD8Q5XKL5 378 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 KAZNQ674X7 775 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 C4orf22Q6V702 233 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 HFE2Q6ZVN8 426 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 RTL10Q7L3V2 364 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 TADA2BQ86TJ2 420 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 TAC4Q86UU9 113 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 FAM131BQ86XD5 332 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 RFX6Q8HWS3 928 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 SCN4BQ8IWT1 228 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 FIBCD1Q8N539 461 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ZNF461Q8TAF7 563 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ACTL9Q8TC94 416 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 RNF139Q8WU17 664 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 C1orf54Q8WWF1 131 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 CASKIN2Q8WXE0 1202 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ATG4AQ8WYN0 398 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 P3H4Q92791 437 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ACSF2Q96CM8 615 aaPredicted RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 LRRC45Q96CN5 670 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 RTP4Q96DX8 246 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 TRMT2BQ96GJ1 504 aaKnown RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 SNF8Q96H20 258 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 CCDC114Q96M63 670 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 CSPG4P5Q96PW8 444 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 FMO2Q99518 471 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 EPAS1Q99814 870 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 FUT8Q9BYC5 575 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 ADAM33Q9BZ11 813 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 DHX35Q9H5Z1 703 aaKnown RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 PIGVQ9NUD9 493 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 MTMR10Q9NXD2 777 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 MTRF1LQ9UGC7 380 aaKnown RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 FBXW11Q9UKB1 542 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 R3HDM2Q9Y2K5 976 aaKnown RBP10.98□□□□□ -0.65
CLN3-248ENST00000636355 NEU2Q9Y3R4 380 aa10.98□□□□□ -0.65
CLN3-248ENST00000636355 DENND4CQ5VZ89 1909 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ZSCAN5CA6NGD5 496 aaPredicted RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 ZBBXA8MT70 800 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 HACD1B0YJ81 288 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 NT5C1B-RDH14C9J2C7 533 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 NCAM2O15394 837 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 VNN2O95498 520 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 CD48P09326 243 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ZDHHC11BP0C7U3 371 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 CSH1P0DML2 217 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 CSH2P0DML3 217 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 MYBL2P10244 700 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 TFE3P19532 575 aaPredicted RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 ITIH2P19823 946 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 KLRC2P26717 231 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 ECHS1P30084 290 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 HOXC13P31276 330 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 STIP1P31948 543 aaKnown RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 CCR1P32246 355 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 SERPINB6P35237 376 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 PBX3P40426 434 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 PPP3CCP48454 512 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 CARSP49589 748 aaKnown RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 OTUD4Q01804 1114 aaKnown RBP10.97□□□□□ -0.65
CLN3-248ENST00000636355 UBE3AQ05086 875 aa10.97□□□□□ -0.65
CLN3-248ENST00000636355 GPS2Q13227 327 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms