RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 RAB41Q5JT25 222 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 EGFLAMQ63HQ2 1017 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 TPGS1Q6ZTW0 290 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 SLC4A11Q8NBS3 891 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 GOLPH3LQ9H4A5 285 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 CD248Q9HCU0 757 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 ZDHHC4Q9NPG8 344 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 CALCOCO1Q9P1Z2 691 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 PILRBQ9UKJ0 227 aa19.35■□□□□ 0.69
CLN3-241ENST00000635861 PATE3B3GLJ2 98 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 TRIM24O15164 1050 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 CISD3P0C7P0 127 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 PTGER3P43115 390 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 ZNF394Q53GI3 561 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 ANKRD52Q8NB46 1076 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 IPO4Q8TEX9 1081 aaKnown RBP19.34■□□□□ 0.69
CLN3-241ENST00000635861 SEMA4DQ92854 862 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 GSDMAQ96QA5 445 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 COQ4Q9Y3A0 265 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 FRYQ5TBA9 3013 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 PRRT4C9JH25 899 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 PENKP01210 267 aaPredicted RBP19.34■□□□□ 0.69
CLN3-241ENST00000635861 RAD23BP54727 409 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 YWHAEP62258 255 aaKnown RBP19.34■□□□□ 0.69
CLN3-241ENST00000635861 RPL6Q02878 288 aaKnown RBP19.34■□□□□ 0.69
CLN3-241ENST00000635861 DUOXA1Q1HG43 343 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 ZNF658Q5TYW1 1059 aaPredicted RBP19.34■□□□□ 0.69
CLN3-241ENST00000635861 MIB1Q86YT6 1006 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 FRMD1Q8N878 549 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 TSG101Q99816 390 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 NUDT5Q9UKK9 219 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 STRIP2Q9ULQ0 834 aa19.34■□□□□ 0.69
CLN3-241ENST00000635861 MDM4O15151 490 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 FKBP3Q00688 224 aaKnown RBP19.33■□□□□ 0.68
CLN3-241ENST00000635861 SH3PXD2AQ5TCZ1 1133 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 PM20D1Q6GTS8 502 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 METTL3Q86U44 580 aaKnown RBP19.33■□□□□ 0.68
CLN3-241ENST00000635861 PIGZQ86VD9 579 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 ZC3H3Q8IXZ2 948 aaKnown RBP19.33■□□□□ 0.68
CLN3-241ENST00000635861 CPXM2Q8N436 756 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 OLA1Q9NTK5 396 aaKnown RBP19.33■□□□□ 0.68
CLN3-241ENST00000635861 TMEM74BQ9NUR3 256 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 RASAL2Q9UJF2 1139 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 SLC6A14Q9UN76 642 aa19.33■□□□□ 0.68
CLN3-241ENST00000635861 IGHV1OR15-9A0A0B4J2B8 117 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 UPK3BL1B0FP48 263 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 UPK3BL2E5RIL1 263 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 CYBBP04839 570 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 NDUFV2P19404 249 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 YWHAGP61981 247 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-241ENST00000635861 LRRC63Q05C16 580 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 ZNF33AQ06730 810 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 ZNF252P-AS1Q0IIN9 211 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 STARD3Q14849 445 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 FYB2Q5VWT5 728 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 TOGARAM2Q6ZUX3 1019 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 ARMCX6Q7L4S7 300 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 UCMAQ8WVF2 138 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 PLD4Q96BZ4 506 aa19.32■□□□□ 0.68
CLN3-241ENST00000635861 XPO1O14980 1071 aaKnown RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 KLKB1P03952 638 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 SERPINF2P08697 491 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 ENGP17813 658 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 ITPKAP23677 461 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 CORO1AP31146 461 aaKnown RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 WASP42768 502 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 PRCPP42785 496 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 BCAT1P54687 386 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 ZNF445P59923 1031 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 EFEMP1Q12805 493 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 ENPP2Q13822 863 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 EIF4HQ15056 248 aaKnown RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 RSRC2Q7L4I2 434 aaKnown RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 FAM217AQ8IXS0 508 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 SMYD4Q8IYR2 804 aaPredicted RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 FMR1NBQ8N0W7 255 aaPredicted RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 ACOX2Q99424 681 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 SLC2A11Q9BYW1 496 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 SLC32A1Q9H598 525 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 MARCH2Q9P0N8 246 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 HESX1Q9UBX0 185 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 HOOK1Q9UJC3 728 aaKnown RBP19.31■□□□□ 0.68
CLN3-241ENST00000635861 KIAA1257Q9ULG3 409 aa19.31■□□□□ 0.68
CLN3-241ENST00000635861 CHD6Q8TD26 2715 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 SMC2O95347 1197 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 ZBED1O96006 694 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 TBXAS1P24557 533 aaPredicted RBP19.3■□□□□ 0.68
CLN3-241ENST00000635861 TKTL1P51854 596 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 MFAP3P55082 362 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 PNOCQ13519 176 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 CUL2Q13617 745 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 SGO2Q562F6 1265 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 DCAF17Q5H9S7 520 aaPredicted RBP19.3■□□□□ 0.68
CLN3-241ENST00000635861 TCERG1LQ5VWI1 586 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 KIAA1211LQ6NV74 962 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 SCML4Q8N228 414 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 SPATA20Q8TB22 786 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 FOXJ1Q92949 421 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 ARID3AQ99856 593 aa19.3■□□□□ 0.68
CLN3-241ENST00000635861 CAPN10Q9HC96 672 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms