RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 C8orf74Q6P047 294 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 TTC27Q6P3X3 843 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 ARCQ7LC44 396 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 OTOP3Q7RTS5 596 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 POLNQ7Z5Q5 900 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 KLHL7Q8IXQ5 586 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 EXD1Q8NHP7 514 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 RAPGEF5Q92565 580 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 SMARCD1Q96GM5 515 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 TMEM175Q9BSA9 504 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 CNPY3Q9BT09 278 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 COLEC11Q9BWP8 271 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 VN1R3Q9BXE9 311 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 ZCWPW1Q9H0M4 648 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 MFSD1Q9H3U5 465 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 PLEKHA4Q9H4M7 779 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 ARGLU1Q9NWB6 273 aaPredicted RBP9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 ASNSD1Q9NWL6 643 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 FAN1Q9Y2M0 1017 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 TRIOO75962 3097 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 C5orf42Q9H799 3197 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 MYO10Q9HD67 2058 aa9.92□□□□□ -0.82
PDLIM5-223ENST00000627587 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 H0Y858 1186 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 TBC1D4O60343 1298 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ZRANB2O95218 330 aaKnown RBP eCLIP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 RALAP11233 206 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 FGFR3P22607 806 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 BDNFP23560 247 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 CETN2P41208 172 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 HDAC4P56524 1084 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 PITX1P78337 314 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 TRADDQ15628 312 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 HADHQ16836 314 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 SMTNL2Q2TAL5 461 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 GLE1Q53GS7 698 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ODF2Q5BJF6 829 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 KCNT1Q5JUK3 1230 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 VARS2Q5ST30 1063 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ZFYVE27Q5T4F4 411 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 MFSD7Q6UXD7 560 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 RSPO2Q6UXX9 243 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 TAS1R1Q7RTX1 841 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 BNIPLQ7Z465 357 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 CENPIQ92674 756 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 SLITRK1Q96PX8 696 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 LRRC4Q9HBW1 653 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 LIMD1Q9UGP4 676 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 AMACRQ9UHK6 382 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ZDBF2Q9HCK1 2354 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 VNN2O95498 520 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 TRUB2O95900 331 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 C1RP00736 705 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 CD48P09326 243 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 MCM3P25205 808 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 SDC4P31431 198 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 PCK1P35558 622 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 CDKN2BP42772 138 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ARSEP51690 589 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ATXN1P54253 815 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ATP11AP98196 1134 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 ELAVL2Q12926 359 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 PPP2R5EQ16537 467 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 TAZQ16635 292 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 EFHC1Q5JVL4 640 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 RTP2Q5QGT7 225 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 FAM171A1Q5VUB5 890 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 FUT10Q6P4F1 479 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 C4orf50Q6ZRC1 276 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 GPR149Q86SP6 731 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 CCDC50Q8IVM0 306 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 RNF168Q8IYW5 571 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 SIX6OS1Q8N1H7 587 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 NT5C3BQ969T7 300 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 RNF25Q96BH1 459 aaPredicted RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 RBM41Q96IZ5 413 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 SFXN1Q9H9B4 322 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 FAM86C1Q9NVL1 165 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 DDX56Q9NY93 547 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 USP18Q9UMW8 372 aa9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 R3HDM2Q9Y2K5 976 aaKnown RBP9.91□□□□□ -0.82
PDLIM5-223ENST00000627587 SF3B1O75533 1304 aaKnown RBP eCLIP9.91□□□□□ -0.822e-6■■■■■ 150.1
PDLIM5-223ENST00000627587 CCDC151A5D8V7 595 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 YJEFN3A6XGL0 299 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 E7ENQ6 273 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 TNFRSF10BO14763 440 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 ENDOD1O94919 500 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 SEC31AO94979 1220 aaKnown RBP9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 KRT7P08729 469 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 KRT10P13645 584 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 CYP2F1P24903 491 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 PTGIRP43119 386 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 PTPN9P43378 593 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 TKTL1P51854 596 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 DAOAP59103 153 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 CDO1Q16878 200 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 SYPL2Q5VXT5 272 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 CEP57Q86XR8 500 aa9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 SPATA2LQ8IUW3 424 aaPredicted RBP9.9□□□□□ -0.82
PDLIM5-223ENST00000627587 HOMEZQ8IX15 550 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms