RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 LPXNO60711 386 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 SEC24DO94855 1032 aaPredicted RBP8.17□□□□□ -1.1
VPS11-209ENST00000622309 UFL1O94874 794 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 SORBS2O94875 1100 aaKnown RBP8.17□□□□□ -1.1
VPS11-209ENST00000622309 ATE1O95260 518 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 KITP10721 976 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 XRCC5P13010 732 aaKnown RBP8.17□□□□□ -1.1
VPS11-209ENST00000622309 IVDP26440 423 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 S100A5P33763 92 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 SCNN1AP37088 669 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 ETV3P41162 512 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 SCNN1DP51172 638 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 MARSP56192 900 aaKnown RBP8.17□□□□□ -1.1
VPS11-209ENST00000622309 UBAP2LQ14157 1087 aaKnown RBP8.17□□□□□ -1.1
VPS11-209ENST00000622309 SEC23AQ15436 765 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 PERM1Q5SV97 790 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 GJB7Q6PEY0 223 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 HPS6Q86YV9 775 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 CPNE9Q8IYJ1 553 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 NPLOC4Q8TAT6 608 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 ATG4AQ8WYN0 398 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 PSD2Q9BQI7 771 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 TP63Q9H3D4 680 aaPredicted RBP8.17□□□□□ -1.1
VPS11-209ENST00000622309 CASS4Q9NQ75 786 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 C12orf4Q9NQ89 552 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 ANKMY1Q9P2S6 941 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 CDC14AQ9UNH5 594 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 GPSM3Q9Y4H4 160 aa8.17□□□□□ -1.1
VPS11-209ENST00000622309 SF3B1O75533 1304 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS11-209ENST00000622309 GOLGA8QA0A0J9YX86 632 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GOLGA8OA6NCC3 632 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 PCP4L1A6NKN8 68 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 POM121CA8CG34 1229 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GOLGA8NF8WBI6 632 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 ATP2A1O14983 1001 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CLOCKO15516 846 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CCNT1O60563 726 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 KRT6AP02538 564 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 KRT6BP04259 564 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 EIF2AK2P19525 551 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 CPOXP36551 454 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 AQP5P55064 265 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 TRAF2Q12933 501 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 PUM3Q15397 648 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 TRIM71Q2Q1W2 868 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 LETM2Q2VYF4 491 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 IGSF11Q5DX21 431 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 NEK5Q6P3R8 708 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GSTA5Q7RTV2 222 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 KBTBD6Q86V97 674 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CPSF7Q8N684 471 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 EFCAB3Q8N7B9 438 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 NLGN2Q8NFZ4 835 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 SLC30A5Q8TAD4 765 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 ACAP3Q96P50 834 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 C1orf50Q9BV19 199 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 SHCBP1LQ9BZQ2 653 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 FOXP3Q9BZS1 431 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 THAP1Q9NVV9 213 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GCNT4Q9P109 453 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 SRP68Q9UHB9 627 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 ACAD8Q9UKU7 415 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 A0A087WXM4 84 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GSG1L2A8MUP6 293 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 TMEM127O75204 238 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 RSL1D1O76021 490 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 NR2F2P24468 414 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GNALP38405 381 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GYG1P46976 350 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 TNNI2P48788 182 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CDH15P55291 814 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 UBXN2AP68543 259 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CDKL1Q00532 357 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CREB5Q02930 508 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 SELENBP1Q13228 472 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 ADGRE1Q14246 886 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 OXA1LQ15070 435 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 STK11Q15831 433 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 BOLA3Q53S33 107 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GPR107Q5VW38 600 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GALNT18Q6P9A2 607 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 TUBA3EQ6PEY2 450 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 SLC51AQ86UW1 340 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 DEFB107AQ8IZN7 70 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 LCORLQ8N3X6 602 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CCDC33Q8N5R6 958 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 LINC00469Q8N7U9 141 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 GPKOWQ92917 476 aaPredicted RBP eCLIP8.16□□□□□ -1.1
VPS11-209ENST00000622309 ZNF486Q96H40 463 aaPredicted RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 KCNK16Q96T55 309 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 EIF2AK1Q9BQI3 630 aaKnown RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 CCDC106Q9BWC9 280 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 FRMD8Q9BZ67 464 aaPredicted RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 COPS7BQ9H9Q2 264 aaPredicted RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 CXorf21Q9HAI6 301 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CHST7Q9NS84 486 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 MARCOQ9UEW3 520 aaPredicted RBP8.16□□□□□ -1.1
VPS11-209ENST00000622309 CORINQ9Y5Q5 1042 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 CPQQ9Y646 472 aa8.16□□□□□ -1.1
VPS11-209ENST00000622309 SLC30A1Q9Y6M5 507 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms