RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GPC5P78333 572 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 PITX1P78337 314 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 CCZ1BP86790 482 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 CCZ1P86791 482 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 EFEMP1Q12805 493 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 DCAF6Q58WW2 860 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 OTUD1Q5VV17 481 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 PARM1Q6UWI2 310 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 H2AFVQ71UI9 128 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 MTSS1LQ765P7 747 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 TAC4Q86UU9 113 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 EMC1Q8N766 993 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 RIN3Q8TB24 985 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 NT5C3BQ969T7 300 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 ARHGEF26Q96DR7 871 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 RSPRY1Q96DX4 576 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 DDX23Q9BUQ8 820 aaKnown RBP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 KLF16Q9BXK1 252 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 NACA2Q9H009 215 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 OBP2AQ9NY56 170 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 RASAL2Q9UJF2 1139 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 INTUQ9ULD6 942 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 REXO2Q9Y3B8 237 aaKnown RBP20.58■□□□□ 0.89
UPF3A-211ENST00000618700 SCINQ9Y6U3 715 aa20.58■□□□□ 0.89
UPF3A-211ENST00000618700 TMEM253P0C7T8 217 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 RFC1P35251 1148 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-211ENST00000618700 VIPR2P41587 438 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 CCDC173Q0VFZ6 552 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 NNTQ13423 1086 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 EIF4EBP2Q13542 120 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-211ENST00000618700 ZNF77Q15935 545 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 TANGO2Q6ICL3 276 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 MIB1Q86YT6 1006 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 CELF5Q8N6W0 485 aaKnown RBP20.57■□□□□ 0.88
UPF3A-211ENST00000618700 ADAMTS19Q8TE59 1207 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 SH3RF2Q8TEC5 729 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 CTNNBL1Q8WYA6 563 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-211ENST00000618700 FGF14Q92915 247 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 MCEEQ96PE7 176 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 PPP1R9BQ96SB3 815 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 NPY6RQ99463 290 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 ADAM33Q9BZ11 813 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 ZFP14Q9HCL3 533 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 SMPD4Q9NXE4 827 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 RRN3Q9NYV6 651 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.57■□□□□ 0.88
UPF3A-211ENST00000618700 SFMBT1Q9UHJ3 866 aa20.57■□□□□ 0.88
UPF3A-211ENST00000618700 KIF26AQ9ULI4 1882 aaPredicted RBP20.56■□□□□ 0.88
UPF3A-211ENST00000618700 DLL1O00548 723 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 DPYSL4O14531 572 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 IRAK2O43187 625 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 ECI2O75521 394 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 RPL7AP62424 266 aaKnown RBP20.56■□□□□ 0.88
UPF3A-211ENST00000618700 SPA17Q15506 151 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 BNIPLQ7Z465 357 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 DDX42Q86XP3 938 aaKnown RBP eCLIP20.56■□□□□ 0.88
UPF3A-211ENST00000618700 E2F7Q96AV8 911 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 ELSPBP1Q96BH3 223 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 SERPINB11Q96P15 392 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 LRRC3BQ96PB8 259 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 GKN1Q9NS71 199 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 MYO1AQ9UBC5 1043 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 HBS1LQ9Y450 684 aaKnown RBP20.56■□□□□ 0.88
UPF3A-211ENST00000618700 NUMBLQ9Y6R0 609 aa20.56■□□□□ 0.88
UPF3A-211ENST00000618700 SLC12A8A0AV02 714 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 HEPACAM2A8MVW5 462 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 LEFTY2O00292 366 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 ARHGAP6O43182 974 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 MSI1O43347 362 aaKnown RBP20.55■□□□□ 0.88
UPF3A-211ENST00000618700 TRUB2O95900 331 aaKnown RBP20.55■□□□□ 0.88
UPF3A-211ENST00000618700 IGLV3-27P01718 113 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 TFE3P19532 575 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-211ENST00000618700 MAGEA1P43355 309 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 TRIP4Q15650 581 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-211ENST00000618700 SLC25A52Q3SY17 297 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 VITQ6UXI7 678 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 ACRBPQ8NEB7 543 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 ADAM32Q8TC27 787 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 RXFP2Q8WXD0 754 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 NXPE3Q969Y0 559 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 PGAP3Q96FM1 320 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-211ENST00000618700 MRPL47Q9HD33 250 aaKnown RBP20.55■□□□□ 0.88
UPF3A-211ENST00000618700 CALCOCO1Q9P1Z2 691 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 STAP1Q9ULZ2 295 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 PCDHA13Q9Y5I0 950 aa20.55■□□□□ 0.88
UPF3A-211ENST00000618700 TMEM191CA6NGB0 347 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 GREM1O60565 184 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 STC2O76061 302 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 IPO7O95373 1038 aaKnown RBP20.54■□□□□ 0.88
UPF3A-211ENST00000618700 PTMAP06454 111 aaKnown RBP20.54■□□□□ 0.88
UPF3A-211ENST00000618700 PDGFRAP16234 1089 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 GPD1P21695 349 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 PTPN9P43378 593 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 COG7P83436 770 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 OGDHQ02218 1023 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 CCDC14Q49A88 953 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 DCUN1D2Q6PH85 259 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 KIAA1958Q8N8K9 716 aa20.54■□□□□ 0.88
UPF3A-211ENST00000618700 ST13P5Q8NFI4 369 aaPredicted RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms