RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DDX3XO00571 662 aaKnown RBP eCLIP14.09□□□□□ -0.15
LINC00540-202ENST00000616974 CORO1AP31146 461 aaKnown RBP14.09□□□□□ -0.15
LINC00540-202ENST00000616974 GJA4P35212 333 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 SLC6A11P48066 632 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 NUMBP49757 651 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 PON2Q15165 354 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 CLEC16AQ2KHT3 1053 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 DCAF6Q58WW2 860 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 TMEM31Q5JXX7 168 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 WDR59Q6PJI9 974 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 NAT16Q8N8M0 369 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 TMEM35BQ8NCS4 154 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 JOSD2Q8TAC2 188 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 SYNCQ9H7C4 482 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 KIF9Q9HAQ2 790 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 ABCC13Q9NSE7 274 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 AIPL1Q9NZN9 384 aa14.09□□□□□ -0.15
LINC00540-202ENST00000616974 RALAP11233 206 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 MMP8P22894 467 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 GABRB2P47870 512 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 PSEN1P49768 467 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 UBXN2BQ14CS0 331 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 SFMBT2Q5VUG0 894 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 CC2D1AQ6P1N0 951 aaPredicted RBP14.08□□□□□ -0.16
LINC00540-202ENST00000616974 PKN3Q6P5Z2 889 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 KLHDC10Q6PID8 442 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 Q6ZS52 159 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 ERICH1Q86X53 443 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 SCML4Q8N228 414 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 MAGEB5Q9BZ81 275 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 AGO1Q9UL18 857 aaKnown RBP14.08□□□□□ -0.16
LINC00540-202ENST00000616974 CAPN11Q9UMQ6 739 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 PIEZO1Q92508 2521 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 SOBPA7XYQ1 873 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 TCF3P15923 654 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 KPNA1P52294 538 aaPredicted RBP14.08□□□□□ -0.16
LINC00540-202ENST00000616974 STARD6P59095 220 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 YWHAZP63104 245 aaKnown RBP14.08□□□□□ -0.16
LINC00540-202ENST00000616974 SLC6A3Q01959 620 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 GAS6Q14393 721 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 DHCR24Q15392 516 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 ASIC2Q16515 512 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 FIGNQ5HY92 759 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 FAM102AQ5T9C2 384 aaPredicted RBP14.08□□□□□ -0.16
LINC00540-202ENST00000616974 IRGQQ8WZA9 623 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 NUP205Q92621 2012 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 E2F7Q96AV8 911 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 C18orf8Q96DM3 657 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 DDX23Q9BUQ8 820 aaKnown RBP14.08□□□□□ -0.16
LINC00540-202ENST00000616974 TRIM7Q9C029 511 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 TRIM5Q9C035 493 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 MFSD1Q9H3U5 465 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 ARHGAP20Q9P2F6 1191 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 ZMYM5Q9UJ78 669 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 SH3BP1Q9Y3L3 701 aa14.08□□□□□ -0.16
LINC00540-202ENST00000616974 FBXO21O94952 628 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 FERP16591 822 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 OPRD1P41143 372 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 ACADSBP45954 432 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 IFNAR2P48551 515 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 CENPCQ03188 943 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 ITPRIPL2Q3MIP1 535 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 SPECC1LQ69YQ0 1117 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 NADSYN1Q6IA69 706 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 RFWD3Q6PCD5 774 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 HTR3DQ70Z44 454 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 MON1BQ7L1V2 547 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 TMC6Q7Z403 805 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 CCDC105Q8IYK2 499 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 CSGALNACT1Q8TDX6 532 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 RNF139Q8WU17 664 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 DNASE1L2Q92874 299 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 FCRL2Q96LA5 508 aaPredicted RBP14.07□□□□□ -0.16
LINC00540-202ENST00000616974 CFAP57Q96MR6 1250 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 SLC2A13Q96QE2 648 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 POPDC2Q9HBU9 364 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 LTB4R2Q9NPC1 389 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 METTL5Q9NRN9 209 aaKnown RBP14.07□□□□□ -0.16
LINC00540-202ENST00000616974 DLGAP2Q9P1A6 1054 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 EML5Q05BV3 1969 aa14.07□□□□□ -0.16
LINC00540-202ENST00000616974 DCHS1Q96JQ0 3298 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 TSPAN3O60637 253 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 TRUB2O95900 331 aaKnown RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 MOCS2O96007 188 aaPredicted RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 SLC6A4P31645 630 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 KLHL30Q0D2K2 578 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 EIF4EBP2Q13542 120 aaPredicted RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ZC3H12AQ5D1E8 599 aaKnown RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 MSANTD2Q6P1R3 559 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 SARM1Q6SZW1 724 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 PJA1Q8NG27 643 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 CHP1Q99653 195 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 THG1LQ9NWX6 298 aaKnown RBP14.06□□□□□ -0.16
LINC00540-202ENST00000616974 TMEM59LQ9UK28 342 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 SNX10Q9Y5X0 201 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 ITIH6Q6UXX5 1313 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 TCRBV5S1A1TA0A578 114 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 KANSL1LA0AUZ9 987 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 E2F8A0AVK6 867 aa14.06□□□□□ -0.16
LINC00540-202ENST00000616974 FAM170BA6NMN3 283 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms