RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 OGDHQ02218 1023 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 DEUP1Q05D60 604 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 NNTQ13423 1086 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 MESDQ14696 234 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 C15orf59Q2T9L4 293 aaPredicted RBP15.33■□□□□ 0.04
CD48-203ENST00000613788 STXBP5Q5T5C0 1151 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 SND1Q7KZF4 910 aaKnown RBP eCLIP15.33■□□□□ 0.04
CD48-203ENST00000613788 MIB1Q86YT6 1006 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 NIPA2Q8N8Q9 360 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 TPCN2Q8NHX9 752 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.33■□□□□ 0.04
CD48-203ENST00000613788 KIAA1524Q8TCG1 905 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 CENPIQ92674 756 aaPredicted RBP15.33■□□□□ 0.04
CD48-203ENST00000613788 FGF13Q92913 245 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 BTBD6Q96KE9 485 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 TBCBQ99426 244 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 KCND1Q9NSA2 647 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 DDIT4Q9NX09 232 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 TRIM10Q9UDY6 481 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 ZKSCAN5Q9Y2L8 839 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 PAXBP1Q9Y5B6 917 aa15.33■□□□□ 0.04
CD48-203ENST00000613788 ZFP37Q9Y6Q3 630 aaPredicted RBP15.33■□□□□ 0.04
CD48-203ENST00000613788 MYO16Q9Y6X6 1858 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 REV3LO60673 3130 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 SLC12A8A0AV02 714 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 NRG2O14511 850 aaPredicted RBP15.32■□□□□ 0.04
CD48-203ENST00000613788 IRAK2O43187 625 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 MBTPS2O43462 519 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 IGLV3-25P01717 112 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 WEE1P30291 646 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 SLC1A1P43005 524 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 NME3Q13232 169 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 TRIP4Q15650 581 aaPredicted RBP15.32■□□□□ 0.04
CD48-203ENST00000613788 CDO1Q16878 200 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 PUS10Q3MIT2 529 aaKnown RBP15.32■□□□□ 0.04
CD48-203ENST00000613788 LEXMQ3ZCV2 418 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 TAC4Q86UU9 113 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 NPAS3Q8IXF0 933 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 ADAM32Q8TC27 787 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 FAM172AQ8WUF8 416 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 SLC22A12Q96S37 553 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 POMKQ9H5K3 350 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 CDH7Q9ULB5 785 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 FAM50BQ9Y247 325 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 TLR6Q9Y2C9 796 aa15.32■□□□□ 0.04
CD48-203ENST00000613788 HBS1LQ9Y450 684 aaKnown RBP15.32■□□□□ 0.04
CD48-203ENST00000613788 SYNJ2BP-COX16A0A087WUM0 186 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 GRXCR2A6NFK2 248 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 TMEM110-MUSTN1A8MSY1 372 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 MDM4O15151 490 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 BUB1BO60566 1050 aaPredicted RBP15.31■□□□□ 0.04
CD48-203ENST00000613788 MOCS3O95396 460 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 SLC2A3P11169 496 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 TFE3P19532 575 aaPredicted RBP15.31■□□□□ 0.04
CD48-203ENST00000613788 GBP2P32456 591 aaPredicted RBP15.31■□□□□ 0.04
CD48-203ENST00000613788 MAN1A1P33908 653 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 RDXP35241 583 aaKnown RBP15.31■□□□□ 0.04
CD48-203ENST00000613788 TBX4P57082 545 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 PITX1P78337 314 aaPredicted RBP15.31■□□□□ 0.04
CD48-203ENST00000613788 ZNF252P-AS1Q0IIN9 211 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 C11orf63Q6NUN7 778 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 BNIPLQ7Z465 357 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 DAAM2Q86T65 1068 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 DDX42Q86XP3 938 aaKnown RBP eCLIP15.31■□□□□ 0.04
CD48-203ENST00000613788 SYCE1Q8N0S2 351 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 RNF34Q969K3 372 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 KLF16Q9BXK1 252 aaPredicted RBP15.31■□□□□ 0.04
CD48-203ENST00000613788 TDP1Q9NUW8 608 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.31■□□□□ 0.04
CD48-203ENST00000613788 COX16Q9P0S2 106 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 ARHGAP26Q9UNA1 814 aa15.31■□□□□ 0.04
CD48-203ENST00000613788 CCR1P32246 355 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 PCK1P35558 622 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 RING1Q06587 406 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 MTA1Q13330 715 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 EIF4EBP2Q13542 120 aaPredicted RBP15.3■□□□□ 0.04
CD48-203ENST00000613788 SH3PXD2AQ5TCZ1 1133 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 CC2D1AQ6P1N0 951 aaPredicted RBP15.3■□□□□ 0.04
CD48-203ENST00000613788 OTOP3Q7RTS5 596 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 ARID3BQ8IVW6 561 aaPredicted RBP15.3■□□□□ 0.04
CD48-203ENST00000613788 UNC45BQ8IWX7 931 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 ZSCAN18Q8TBC5 510 aaPredicted RBP15.3■□□□□ 0.04
CD48-203ENST00000613788 UBE2Q2Q8WVN8 375 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 ACSF2Q96CM8 615 aaPredicted RBP15.3■□□□□ 0.04
CD48-203ENST00000613788 ZSWIM3Q96MP5 696 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 WDCPQ9H6R7 721 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 KIF9Q9HAQ2 790 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 USTQ9Y2C2 406 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 CPQQ9Y646 472 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 ALG6Q9Y672 507 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 NOTCH4Q99466 2003 aa15.3■□□□□ 0.04
CD48-203ENST00000613788 MSI1O43347 362 aaKnown RBP15.29■□□□□ 0.04
CD48-203ENST00000613788 HMBSP08397 361 aa15.29■□□□□ 0.04
CD48-203ENST00000613788 HARS2P49590 506 aaKnown RBP15.29■□□□□ 0.04
CD48-203ENST00000613788 CXCR3P49682 368 aa15.29■□□□□ 0.04
CD48-203ENST00000613788 HDAC4P56524 1084 aa15.29■□□□□ 0.04
CD48-203ENST00000613788 PPP2R5DQ14738 602 aa15.29■□□□□ 0.04
CD48-203ENST00000613788 HADHQ16836 314 aaKnown RBP15.29■□□□□ 0.04
CD48-203ENST00000613788 ARL13BQ3SXY8 428 aa15.29■□□□□ 0.04
CD48-203ENST00000613788 BRMS1LQ5PSV4 323 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms