RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MOCS3O95396 460 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 F9P00740 461 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 HDCP19113 662 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 TFE3P19532 575 aaPredicted RBP14.96□□□□□ -0.01
UPF1-211ENST00000600868 KCNA5P22460 613 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 WEE1P30291 646 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 KPNA1P52294 538 aaPredicted RBP14.96□□□□□ -0.01
UPF1-211ENST00000600868 PITX1P78337 314 aaPredicted RBP14.96□□□□□ -0.01
UPF1-211ENST00000600868 SLC7A9P82251 487 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 ATP11AP98196 1134 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 SMAD4Q13485 552 aaKnown RBP14.96□□□□□ -0.01
UPF1-211ENST00000600868 MESDQ14696 234 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 CLUL1Q15846 466 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 C15orf59Q2T9L4 293 aaPredicted RBP14.96□□□□□ -0.01
UPF1-211ENST00000600868 STXBP5Q5T5C0 1151 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 C11orf63Q6NUN7 778 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 TAC4Q86UU9 113 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 CMTM8Q8IZV2 173 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 FAM172AQ8WUF8 416 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 PPM1EQ8WY54 764 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 SLC22A12Q96S37 553 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 ADAM33Q9BZ11 813 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 NACA2Q9H009 215 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 FAM204AQ9H8W3 233 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 GDE1Q9NZC3 331 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 SFMBT1Q9UHJ3 866 aa14.96□□□□□ -0.01
UPF1-211ENST00000600868 HBS1LQ9Y450 684 aaKnown RBP14.96□□□□□ -0.01
UPF1-211ENST00000600868 GRID2IPA4D2P6 1211 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 H3BQ06 376 aaPredicted RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 MDM4O15151 490 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 IRAK2O43187 625 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 RNF8O76064 485 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 RDXP35241 583 aaKnown RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 PCK1P35558 622 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 SLC1A1P43005 524 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 HDAC4P56524 1084 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 COG7P83436 770 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 DEUP1Q05D60 604 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 TRIP4Q15650 581 aaPredicted RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 CDO1Q16878 200 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 SH3PXD2AQ5TCZ1 1133 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 SLFN11Q7Z7L1 901 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 NPAS3Q8IXF0 933 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 SYCE1Q8N0S2 351 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 ARL14EPQ8N8R7 260 aaPredicted RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 LRRC57Q8N9N7 239 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 ADAM32Q8TC27 787 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 ING5Q8WYH8 240 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 FGF13Q92913 245 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 CYP2S1Q96SQ9 504 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 KLF16Q9BXK1 252 aaPredicted RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 DDIT4Q9NX09 232 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.95□□□□□ -0.02
UPF1-211ENST00000600868 CALCOCO1Q9P1Z2 691 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 RASAL2Q9UJF2 1139 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 TLR6Q9Y2C9 796 aa14.95□□□□□ -0.02
UPF1-211ENST00000600868 USP15Q9Y4E8 981 aaPredicted RBP14.95□□□□□ -0.02
UPF1-211ENST00000600868 BRWD1Q9NSI6 2320 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 SLC12A8A0AV02 714 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 IGLV3-27P01718 113 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 CKMP06732 381 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 MBL2P11226 248 aaPredicted RBP14.94□□□□□ -0.02
UPF1-211ENST00000600868 AVPR1AP37288 418 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 CXCR3P49682 368 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 RING1Q06587 406 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 CBX2Q14781 532 aaPredicted RBP14.94□□□□□ -0.02
UPF1-211ENST00000600868 POTEHQ6S545 545 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 SND1Q7KZF4 910 aaKnown RBP eCLIP14.94□□□□□ -0.02
UPF1-211ENST00000600868 GET4Q7L5D6 327 aaPredicted RBP14.94□□□□□ -0.02
UPF1-211ENST00000600868 DAAM2Q86T65 1068 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 MIB1Q86YT6 1006 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 ARFGAP1Q8N6T3 406 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 MAFAQ8NHW3 353 aaPredicted RBP14.94□□□□□ -0.02
UPF1-211ENST00000600868 UBE2Q2Q8WVN8 375 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 SLC39A13Q96H72 371 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 ZFRQ96KR1 1074 aaKnown RBP14.94□□□□□ -0.02
UPF1-211ENST00000600868 ZSWIM3Q96MP5 696 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 ALS2CR12Q96Q35 445 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 POMKQ9H5K3 350 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 SLITRK6Q9H5Y7 841 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 PIGVQ9NUD9 493 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 CDH7Q9ULB5 785 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 ARHGAP26Q9UNA1 814 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 ALG6Q9Y672 507 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 CAPN6Q9Y6Q1 641 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 ZFP37Q9Y6Q3 630 aaPredicted RBP14.94□□□□□ -0.02
UPF1-211ENST00000600868 DENND4AQ7Z401 1863 aa14.94□□□□□ -0.02
UPF1-211ENST00000600868 GRXCR2A6NFK2 248 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 TMEM110-MUSTN1A8MSY1 372 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 MSI1O43347 362 aaKnown RBP14.93□□□□□ -0.02
UPF1-211ENST00000600868 MBTPS2O43462 519 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 LRCH4O75427 683 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 PALMO75781 387 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 SLC2A3P11169 496 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 COMTP21964 271 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 CCR1P32246 355 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 TBX4P57082 545 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 NME3Q13232 169 aa14.93□□□□□ -0.02
UPF1-211ENST00000600868 PPP2R5DQ14738 602 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms