RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PMS2CLQ68D20 193 aa11□□□□□ -0.65
LIG1-213ENST00000596672 TMEM215Q68D42 235 aa11□□□□□ -0.65
LIG1-213ENST00000596672 DPY19L2P1Q6NXN4 242 aa11□□□□□ -0.65
LIG1-213ENST00000596672 PMF1Q6P1K2 205 aa11□□□□□ -0.65
LIG1-213ENST00000596672 GJB7Q6PEY0 223 aa11□□□□□ -0.65
LIG1-213ENST00000596672 RRAGAQ7L523 313 aa11□□□□□ -0.65
LIG1-213ENST00000596672 GPR161Q8N6U8 529 aaKnown RBP11□□□□□ -0.65
LIG1-213ENST00000596672 SLC35F5Q8WV83 523 aa11□□□□□ -0.65
LIG1-213ENST00000596672 EDEM1Q92611 657 aa11□□□□□ -0.65
LIG1-213ENST00000596672 ACDQ96AP0 544 aa11□□□□□ -0.65
LIG1-213ENST00000596672 CEP63Q96MT8 703 aa11□□□□□ -0.65
LIG1-213ENST00000596672 TSG101Q99816 390 aa11□□□□□ -0.65
LIG1-213ENST00000596672 BBS2Q9BXC9 721 aa11□□□□□ -0.65
LIG1-213ENST00000596672 TMEM74BQ9NUR3 256 aa11□□□□□ -0.65
LIG1-213ENST00000596672 DNAJC17Q9NVM6 304 aaKnown RBP11□□□□□ -0.65
LIG1-213ENST00000596672 DEC1Q9P2X7 70 aa11□□□□□ -0.65
LIG1-213ENST00000596672 CYTH4Q9UIA0 394 aa11□□□□□ -0.65
LIG1-213ENST00000596672 RASAL2Q9UJF2 1139 aa11□□□□□ -0.65
LIG1-213ENST00000596672 AJAP1Q9UKB5 411 aaPredicted RBP11□□□□□ -0.65
LIG1-213ENST00000596672 STARD13Q9Y3M8 1113 aa11□□□□□ -0.65
LIG1-213ENST00000596672 RAD54BQ9Y620 910 aa11□□□□□ -0.65
LIG1-213ENST00000596672 ZZEF1O43149 2961 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 ZFYVE26Q68DK2 2539 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 ASPMQ8IZT6 3477 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 MUC22E2RYF6 1773 aaPredicted RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 BCLAF3A2AJT9 711 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 PRR5-ARHGAP8B1AHC4 643 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 PSMA7O14818 248 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 XPO1O14980 1071 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 STX10O60499 249 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 ZBED1O96006 694 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 CORO1AP31146 461 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 MPLP40238 635 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 PTGER3P43115 390 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 SGSHP51688 502 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 MARSP56192 900 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 ARHGAP8P85298 464 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 ADIGQ0VDE8 80 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 KCNH2Q12809 1159 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 CAMK4Q16566 473 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 TMEM270Q6UE05 265 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 LCLAT1Q6UWP7 414 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 FAM217AQ8IXS0 508 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 EHBP1Q8NDI1 1231 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 SECISBP2LQ93073 1101 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 PIWIL1Q96J94 861 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 LOXL4Q96JB6 756 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 SRRTQ9BXP5 876 aaKnown RBP10.99□□□□□ -0.65
LIG1-213ENST00000596672 NACA2Q9H009 215 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 TJP2Q9UDY2 1190 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 SFMBT1Q9UHJ3 866 aa10.99□□□□□ -0.65
LIG1-213ENST00000596672 PCDH15Q96QU1 1955 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 GOLGA6L7A0A1B0GV03 622 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 TCRBV21S2A2A0A5A6 115 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 SLC12A8A0AV02 714 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 BECN2A8MW95 431 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 MSI1O43347 362 aaKnown RBP10.98□□□□□ -0.65
LIG1-213ENST00000596672 VDRP11473 427 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 CD19P15391 556 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 MFAP3P55082 362 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 DAOAP59103 153 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 TRIP4Q15650 581 aaPredicted RBP10.98□□□□□ -0.65
LIG1-213ENST00000596672 SGO2Q562F6 1265 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 BSPRYQ5W0U4 402 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 GRAMD4Q6IC98 578 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 DENND1BQ6P3S1 775 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 FOXR2Q6PJQ5 311 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 DENND1CQ8IV53 801 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 TMEFF1Q8IYR6 380 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 DEFB119Q8N690 84 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 ZNF513Q8N8E2 541 aaPredicted RBP10.98□□□□□ -0.65
LIG1-213ENST00000596672 WFDC5Q8TCV5 224 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 NETO1Q8TDF5 533 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 HMGB4Q8WW32 186 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 SORCS1Q8WY21 1168 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 KCTD13Q8WZ19 329 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 INTS2Q9H0H0 1204 aaKnown RBP10.98□□□□□ -0.65
LIG1-213ENST00000596672 FSCN3Q9NQT6 498 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 CACNA2D2Q9NY47 1150 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 MARCH2Q9P0N8 246 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.98□□□□□ -0.65
LIG1-213ENST00000596672 CNTN6Q9UQ52 1028 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 PCDHB4Q9Y5E5 795 aa10.98□□□□□ -0.65
LIG1-213ENST00000596672 CDX4O14627 284 aaPredicted RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 TSPAN3O60637 253 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 LCP1P13796 627 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 NDUFV2P19404 249 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 SLC9A1P19634 815 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 RPL34P49207 117 aaKnown RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 BCAT1P54687 386 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 PITX1P78337 314 aaPredicted RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 IRX4P78413 519 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 FOXK2Q01167 660 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CREB5Q02930 508 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 BST2Q10589 180 aaKnown RBP10.97□□□□□ -0.65
LIG1-213ENST00000596672 ENPP2Q13822 863 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CNGA2Q16280 664 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 CCDC40Q4G0X9 1142 aa10.97□□□□□ -0.65
LIG1-213ENST00000596672 STPG1Q5TH74 334 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms