RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MAP3K6O95382 1288 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 HOXD10P28358 340 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 ELK3P41970 407 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 SULT1E1P49888 294 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 WDR4P57081 412 aaKnown RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 SLC10A2Q12908 348 aaPredicted RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 MDH1BQ5I0G3 518 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 AGMOQ6ZNB7 445 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 IGDCC3Q8IVU1 814 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 FAM149B1Q96BN6 582 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 QKIQ96PU8 341 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 TGS1Q96RS0 853 aaKnown RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 KIF9Q9HAQ2 790 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 SSU72Q9NP77 194 aaKnown RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 ETNK2Q9NVF9 386 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 FGFR1OP2Q9NVK5 253 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 CACNG4Q9UBN1 327 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 FZD10Q9ULW2 581 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 TSC2P49815 1807 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 SPAG6O75602 509 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 ASMTLO95671 621 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 GHRP10912 638 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 AFF1P51825 1210 aaKnown RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 YWHAZP63104 245 aaKnown RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 PTK7Q13308 1070 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 MTM1Q13496 603 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 LACTB2Q53H82 288 aaPredicted RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 NCBP2-AS2Q69YL0 99 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 SLC2A13Q96QE2 648 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 MAGEB5Q9BZ81 275 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 CRTAC1Q9NQ79 661 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 DDX43Q9NXZ2 648 aaKnown RBP20.42■□□□□ 0.86
CLIP3-206ENST00000593074 SRRDQ9UH36 339 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 NOD1Q9Y239 953 aa20.42■□□□□ 0.86
CLIP3-206ENST00000593074 ZNF623O75123 536 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 LHX1P48742 406 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 RAB27AP51159 221 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 IL9RQ01113 521 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 ITGA7Q13683 1181 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 DEFB115Q30KQ5 88 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 NUGGCQ68CJ6 796 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 RNF180Q86T96 592 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 FAM131BQ86XD5 332 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 MICALL1Q8N3F8 863 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 MZB1Q8WU39 189 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 DCAKDQ8WVC6 231 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 NDRG1Q92597 394 aaKnown RBP20.41■□□□□ 0.86
CLIP3-206ENST00000593074 CAPNS2Q96L46 248 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 NPY6RQ99463 290 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 KDM4CQ9H3R0 1056 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 ACTR5Q9H9F9 607 aaPredicted RBP20.41■□□□□ 0.86
CLIP3-206ENST00000593074 PRDM16Q9HAZ2 1276 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 KRT82Q9NSB4 513 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 KBTBD13C9JR72 458 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 TYROBPO43914 113 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 SPAG7O75391 227 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 GCATO75600 419 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 CABYRO75952 493 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 FAM200BP0CF97 657 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 RPL9P32969 192 aaKnown RBP20.41■□□□□ 0.86
CLIP3-206ENST00000593074 NOS2P35228 1153 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 SCNN1GP51170 649 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 CLCNKBP51801 687 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 ACTN3Q08043 901 aaPredicted RBP20.41■□□□□ 0.86
CLIP3-206ENST00000593074 DCAF6Q58WW2 860 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 AGGF1Q8N302 714 aaeCLIP20.41■□□□□ 0.86
CLIP3-206ENST00000593074 OLFM3Q96PB7 478 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 CYTH2Q99418 400 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 LRRC4Q9HBW1 653 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 DTLQ9NZJ0 730 aa20.41■□□□□ 0.86
CLIP3-206ENST00000593074 GOT1P17174 413 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 ARL4AP40617 200 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 SPRED3Q2MJR0 410 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 SYCP2LQ5T4T6 812 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 DSTYKQ6XUX3 929 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 SIX6OS1Q8N1H7 587 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 C3orf58Q8NDZ4 430 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 CCDC110Q8TBZ0 833 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 MRRFQ96E11 262 aaKnown RBP20.4■□□□□ 0.86
CLIP3-206ENST00000593074 SYT15Q9BQS2 421 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 MED10Q9BTT4 135 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 STAP1Q9ULZ2 295 aa20.4■□□□□ 0.86
CLIP3-206ENST00000593074 A0A1W2PPM1 405 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 TCRBV9S1A1TA0A576 114 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 CCT8L1PA6NM43 557 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 NDUFV1P49821 464 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 PITX1P78337 314 aaPredicted RBP20.39■□□□□ 0.86
CLIP3-206ENST00000593074 LPIN1Q14693 890 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 KCNT2Q6UVM3 1135 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 C4orf33Q8N1A6 199 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 PYROXD2Q8N2H3 581 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 RNF169Q8NCN4 708 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 MCUQ8NE86 351 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 ETNK1Q9HBU6 452 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 POPDC2Q9HBU9 364 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 PNPLA8Q9NP80 782 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 TRMT13Q9NUP7 481 aaKnown RBP20.39■□□□□ 0.86
CLIP3-206ENST00000593074 USP15Q9Y4E8 981 aaPredicted RBP20.39■□□□□ 0.86
CLIP3-206ENST00000593074 CENPFP49454 3210 aa20.39■□□□□ 0.86
CLIP3-206ENST00000593074 A0A0U1RQF3 1178 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms