RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CNOT10Q9H9A5 744 aaKnown RBP14.73□□□□□ -0.05
LIG3-205ENST00000585941 PPCSQ9HAB8 311 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 NOVA2Q9UNW9 492 aaKnown RBP14.73□□□□□ -0.05
LIG3-205ENST00000585941 HEY1Q9Y5J3 304 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 HTTP42858 3142 aa14.73□□□□□ -0.05
LIG3-205ENST00000585941 ALOX15BO15296 676 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 NBNO60934 754 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 ITGB1P05556 798 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 FYNP06241 537 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 USP17L7P0C7H9 530 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 NCAM1P13591 858 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 OR1G1P47890 313 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 ATXN1P54253 815 aaKnown RBP14.72□□□□□ -0.05
LIG3-205ENST00000585941 CACNA2D1P54289 1103 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 PPP2R2AP63151 447 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 NFE2Q16621 373 aaPredicted RBP14.72□□□□□ -0.05
LIG3-205ENST00000585941 ARL13BQ3SXY8 428 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 OTUD1Q5VV17 481 aaPredicted RBP14.72□□□□□ -0.05
LIG3-205ENST00000585941 SYPL2Q5VXT5 272 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 GPRIN1Q7Z2K8 1008 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 NAT8LQ8N9F0 302 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 SLC7A14Q8TBB6 771 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 CPT1BQ92523 772 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 FUBP3Q96I24 572 aaKnown RBP eCLIP14.72□□□□□ -0.05
LIG3-205ENST00000585941 FERMT1Q9BQL6 677 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 USP29Q9HBJ7 922 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 SAYSD1Q9NPB0 183 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 TMEM30AQ9NV96 361 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 CWC15Q9P013 229 aaKnown RBP14.72□□□□□ -0.05
LIG3-205ENST00000585941 OGDHLQ9ULD0 1010 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 LRFN2Q9ULH4 789 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 NAALADL1Q9UQQ1 740 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 USP3Q9Y6I4 520 aa14.72□□□□□ -0.05
LIG3-205ENST00000585941 COL4A4P53420 1690 aaPredicted RBP14.72□□□□□ -0.05
LIG3-205ENST00000585941 A0A087WUV0 522 aaPredicted RBP14.71□□□□□ -0.05
LIG3-205ENST00000585941 TLDC2A0PJX2 215 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 SRRM3A6NNA2 597 aaPredicted RBP14.71□□□□□ -0.05
LIG3-205ENST00000585941 TADA2AO75478 443 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 TSHRP16473 764 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 ADRA1BP35368 520 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 HCAR3P49019 387 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 CBLBQ13191 982 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 SLC45A4Q5BKX6 768 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 DNAJC21Q5F1R6 531 aaKnown RBP14.71□□□□□ -0.05
LIG3-205ENST00000585941 HFE2Q6ZVN8 426 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 PDZD4Q76G19 769 aaPredicted RBP14.71□□□□□ -0.05
LIG3-205ENST00000585941 RIBC1Q8N443 379 aaPredicted RBP14.71□□□□□ -0.05
LIG3-205ENST00000585941 DBF4BQ8NFT6 615 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 BEGAINQ9BUH8 593 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 COLEC11Q9BWP8 271 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 MRPL9Q9BYD2 267 aaKnown RBP14.71□□□□□ -0.05
LIG3-205ENST00000585941 ZCWPW1Q9H0M4 648 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 FBXW11Q9UKB1 542 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 RAD54BQ9Y620 910 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 TTC3P53804 2025 aa14.71□□□□□ -0.05
LIG3-205ENST00000585941 CHADO15335 359 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 KCNN4O15554 427 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 HPDP32754 393 aaPredicted RBP14.71□□□□□ -0.06
LIG3-205ENST00000585941 IRAK1P51617 712 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 MAGOHP61326 146 aaKnown RBP14.71□□□□□ -0.06
LIG3-205ENST00000585941 ELAVL2Q12926 359 aaKnown RBP14.71□□□□□ -0.06
LIG3-205ENST00000585941 NME3Q13232 169 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 VSTM1Q6UX27 236 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 TAOK1Q7L7X3 1001 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 BHLHA9Q7RTU4 235 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 LRRTM3Q86VH5 581 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 PDIK1LQ8N165 341 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 ZNF784Q8NCA9 323 aaPredicted RBP14.71□□□□□ -0.06
LIG3-205ENST00000585941 RNF139Q8WU17 664 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 QKIQ96PU8 341 aaKnown RBP eCLIP14.71□□□□□ -0.06
LIG3-205ENST00000585941 KLC2Q9H0B6 622 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 PIGVQ9NUD9 493 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 TMLHEQ9NVH6 421 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 DNAJC17Q9NVM6 304 aaKnown RBP14.71□□□□□ -0.06
LIG3-205ENST00000585941 CALCOCO1Q9P1Z2 691 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 TANC1Q9C0D5 1861 aa14.71□□□□□ -0.06
LIG3-205ENST00000585941 E7ESA3 106 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 GCATO75600 419 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 GOT1P17174 413 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 CYP2C18P33260 490 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 MDH1P40925 334 aaKnown RBP14.7□□□□□ -0.06
LIG3-205ENST00000585941 GNGT1P63211 74 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 BASP1P80723 227 aaKnown RBP14.7□□□□□ -0.06
LIG3-205ENST00000585941 TNFAIP8L3Q5GJ75 292 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 BSPRYQ5W0U4 402 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 NCBP2-AS2Q69YL0 99 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 UHMK1Q8TAS1 419 aaKnown RBP14.7□□□□□ -0.06
LIG3-205ENST00000585941 C9orf72Q96LT7 481 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 PWWP2AQ96N64 755 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 DEFB118Q96PH6 123 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 OXCT2Q9BYC2 517 aaPredicted RBP14.7□□□□□ -0.06
LIG3-205ENST00000585941 C10orf88Q9H8K7 445 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 WDR6Q9NNW5 1121 aaKnown RBP14.7□□□□□ -0.06
LIG3-205ENST00000585941 ARHGEF4Q9NR80 690 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 DDIT4Q9NX09 232 aa14.7□□□□□ -0.06
LIG3-205ENST00000585941 OR6C75A6NL08 312 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 EEF2KO00418 725 aaKnown RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 B4GALT3O60512 393 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 CDH16O75309 829 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 STK10O94804 968 aaKnown RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms