RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	NEDD8-MDP1	E9PL57	170 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708		M0QYV0	167 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TULP2	O00295	520 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SCAMP3	O14828	347 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	PENK	P01210	267 aa	Predicted RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	KLKB1	P03952	638 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	CYBB	P04839	570 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	CORO1A	P31146	461 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	MTIF2	P46199	727 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	HARS2	P49590	506 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	FOXK2	Q01167	660 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	USP39	Q53GS9	565 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	PMF1	Q6P1K2	205 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ZSWIM1	Q9BR11	485 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	POLM	Q9NP87	494 aa	Predicted RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	DNAJC17	Q9NVM6	304 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	STOML2	Q9UJZ1	356 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	NUDT5	Q9UKK9	219 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	AGO1	Q9UL18	857 aa	Known RBP	13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	PCDHGA5	Q9Y5G8	931 aa		13.17	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SPAG17	Q6Q759	2223 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SLC12A8	A0AV02	714 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	YJEFN3	A6XGL0	299 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708		E7ENQ6	273 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	GFRA2	O00451	464 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	MDM4	O15151	490 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	LTF	P02788	710 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	KRT5	P13647	590 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	BRD2	P25440	801 aa	Known RBP	13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	GPD2	P43304	727 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ID4	P47928	161 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	DGKG	P49619	791 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SEC13	P55735	322 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	RING1	Q06587	406 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	NNT	Q13423	1086 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	BYSL	Q13895	437 aa	Known RBP	13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	DPCR1	Q3MIW9	517 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	C10orf76	Q5T2E6	689 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	UNC45B	Q8IWX7	931 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	KIAA2013	Q8IYS2	634 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ALLC	Q8N6M5	410 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	NAT16	Q8N8M0	369 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TXNDC5	Q8NBS9	432 aa	Known RBP	13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ZNF606	Q8WXB4	792 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SHC3	Q92529	594 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	AZIN2	Q96A70	460 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	HHIP	Q96QV1	700 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	NDST4	Q9H3R1	872 aa		13.16	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	RHOBTB1	O94844	696 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	KLF8	O95600	359 aa	Predicted RBP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	CISD3	P0C7P0	127 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	LCP1	P13796	627 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	HNRNPL	P14866	589 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TGM1	P22735	817 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	EEF1G	P26641	437 aa	Known RBP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	PON1	P27169	355 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	GNA15	P30679	374 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	NTSR1	P30989	418 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TIE1	P35590	1138 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SNX16	P57768	344 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	BPIFB4	P59827	614 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	KDSR	Q06136	332 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	MESP2	Q0VG99	397 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ELF2	Q15723	593 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	CSRP2	Q16527	193 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	VWA3B	Q502W6	1294 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	MPPE1	Q53F39	396 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	FYB2	Q5VWT5	728 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	NUGGC	Q68CJ6	796 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SDE2	Q6IQ49	451 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	RBM43	Q6ZSC3	357 aa	Known RBP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TPGS1	Q6ZTW0	290 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ERMP1	Q7Z2K6	904 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TMEM110	Q86TL2	294 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	CREBRF	Q8IUR6	639 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	FMNL3	Q8IVF7	1028 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	DCLK2	Q8N568	766 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	FAM160A2	Q8N612	972 aa	Predicted RBP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ZNF513	Q8N8E2	541 aa	Predicted RBP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	ZNF557	Q8N988	423 aa	Predicted RBP	13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	TUBGCP2	Q9BSJ2	902 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	CRACR2A	Q9BSW2	395 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SLC4A5	Q9BY07	1137 aa		13.15	□□□□□ -0.3
CDK5RAP3-222	ENST00000581708	SGK1	O00141	431 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ZBTB24	O43167	697 aa	Predicted RBP	13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	IRAK2	O43187	625 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	TIMM44	O43615	452 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	GABBR2	O75899	941 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	LETM1	O95202	739 aa	Predicted RBP	13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	EPN2	O95208	641 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	IGLV3-27	P01718	113 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SLC9A1	P19634	815 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PXN	P49023	591 aa	Predicted RBP	13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SLC11A2	P49281	568 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PTK2	Q05397	1052 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.14	□□□□□ -0.31	6e-7	■□□□□ 10.6
CDK5RAP3-222	ENST00000581708	EIF4H	Q15056	248 aa	Known RBP	13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SPDYC	Q5MJ68	293 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	MPP7	Q5T2T1	576 aa		13.14	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ADGRF1	Q5T601	910 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms