RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CDK5RAP1Q96SZ6 601 aaKnown RBP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 SNRNP25Q9BV90 132 aaKnown RBP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 LMAN2LQ9H0V9 348 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 WDR6Q9NNW5 1121 aaKnown RBP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 TRPM5Q9NZQ8 1165 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 COX16Q9P0S2 106 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 UXTQ9UBK9 157 aaPredicted RBP14.24□□□□□ -0.13
CCDC40-209ENST00000573474 FZD10Q9ULW2 581 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 EFR3BQ9Y2G0 817 aa14.24□□□□□ -0.13
CCDC40-209ENST00000573474 PLXNA3P51805 1871 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CCDC188H7C350 402 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 IRAK2O43187 625 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CTIFO43310 598 aaKnown RBP14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CLASP2O75122 1294 aaKnown RBP14.23□□□□□ -0.13
CCDC40-209ENST00000573474 TJP3O95049 919 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CSPG5O95196 566 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 LRG1P02750 347 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 GTF2F1P35269 517 aaKnown RBP eCLIP14.23□□□□□ -0.13
CCDC40-209ENST00000573474 ADRA1BP35368 520 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CDH6P55285 790 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 C2orf54Q08AI8 447 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 EIF4EBP2Q13542 120 aaPredicted RBP14.23□□□□□ -0.13
CCDC40-209ENST00000573474 ARL13BQ3SXY8 428 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 PPP2R2DQ66LE6 453 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 TADA2BQ86TJ2 420 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 TDHQ8IZJ6 230 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CCDC185Q8N715 623 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 UBXN4Q92575 508 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 CASP10Q92851 521 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 RNF34Q969K3 372 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 ZNF512Q96ME7 567 aaPredicted RBP14.23□□□□□ -0.13
CCDC40-209ENST00000573474 SERPINB11Q96P15 392 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 HEMGNQ9BXL5 484 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 AP1M1Q9BXS5 423 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 WDCPQ9H6R7 721 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 SLC28A3Q9HAS3 691 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 RBM12Q9NTZ6 932 aaKnown RBP14.23□□□□□ -0.13
CCDC40-209ENST00000573474 GPATCH2LQ9NWQ4 482 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 AP4E1Q9UPM8 1137 aa14.23□□□□□ -0.13
CCDC40-209ENST00000573474 hCG_1818297A0A087WSY0 165 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ZNF840PA6NDX5 716 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ZNF487B1APH4 448 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 C8AP07357 584 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 L1CAMP32004 1257 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 SCAPQ12770 1279 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 DPYSL3Q14195 570 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 LLGL1Q15334 1064 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 DPYSL2Q16555 572 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 CA9Q16790 459 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ZC3H12AQ5D1E8 599 aaKnown RBP14.22□□□□□ -0.13
CCDC40-209ENST00000573474 EFHC2Q5JST6 749 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 BRMS1LQ5PSV4 323 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 C10orf120Q5SQS8 335 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 TEX35Q5T0J7 233 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ANKS1BQ7Z6G8 1248 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ADAT2Q7Z6V5 191 aaKnown RBP14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ELMOD1Q8N336 334 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 NOA1Q8NC60 698 aaKnown RBP14.22□□□□□ -0.13
CCDC40-209ENST00000573474 HDAC7Q8WUI4 952 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 ARNTL2Q8WYA1 636 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 CALN1Q9BXU9 219 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 MAK16Q9BXY0 300 aaKnown RBP14.22□□□□□ -0.13
CCDC40-209ENST00000573474 PLEKHA4Q9H4M7 779 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 DHX35Q9H5Z1 703 aaKnown RBP14.22□□□□□ -0.13
CCDC40-209ENST00000573474 CERS4Q9HA82 394 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 PCDH18Q9HCL0 1135 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 SFMBT1Q9UHJ3 866 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 NUDT5Q9UKK9 219 aa14.22□□□□□ -0.13
CCDC40-209ENST00000573474 CEP290O15078 2479 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 TCRBV7S2A1N4TA0A589 114 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 TLR5O60602 858 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 CD48P09326 243 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 SLC2A3P11169 496 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 KRT10P13645 584 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 CCR1P32246 355 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 KPNA1P52294 538 aaPredicted RBP14.21□□□□□ -0.13
CCDC40-209ENST00000573474 EFEMP1Q12805 493 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 KLF1Q13351 362 aaPredicted RBP14.21□□□□□ -0.13
CCDC40-209ENST00000573474 NNTQ13423 1086 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 PPP2R5DQ14738 602 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 SIX1Q15475 284 aaPredicted RBP14.21□□□□□ -0.13
CCDC40-209ENST00000573474 PABPC1LQ4VXU2 614 aaKnown RBP14.21□□□□□ -0.13
CCDC40-209ENST00000573474 PPM1LQ5SGD2 360 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 HECTD3Q5T447 861 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 KAZNQ674X7 775 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 RFX6Q8HWS3 928 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 SLC22A17Q8WUG5 538 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 KCTD15Q96SI1 283 aaPredicted RBP14.21□□□□□ -0.13
CCDC40-209ENST00000573474 ZNF670Q9BS34 389 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 HERPUD2Q9BSE4 406 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 TKTL2Q9H0I9 626 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 HOMER3Q9NSC5 361 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 MTMR10Q9NXD2 777 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 ARHGEF38Q9NXL2 777 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 MARCH2Q9P0N8 246 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 RCOR3Q9P2K3 495 aaPredicted RBP14.21□□□□□ -0.13
CCDC40-209ENST00000573474 DPP7Q9UHL4 492 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 TLR6Q9Y2C9 796 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms