RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 LPIN3Q9BQK8 851 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 TMEM175Q9BSA9 504 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 ISCUQ9H1K1 167 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 SIX2Q9NPC8 291 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 PAK5Q9P286 719 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 HMGXB4Q9UGU5 601 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 CCL16O15467 120 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 AMPD1P23109 780 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 MATKP42679 507 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 AMPD2Q01433 879 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 MTM1Q13496 603 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 ZNF449Q6P9G9 518 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 EMBQ6PCB8 327 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 KREMEN2Q8NCW0 462 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 NDRG1Q92597 394 aaKnown RBP10.47□□□□□ -0.73
SMG6-213ENST00000573166 ALG13Q9NP73 1137 aaKnown RBP10.47□□□□□ -0.73
SMG6-213ENST00000573166 SMYD2Q9NRG4 433 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 OR12D3Q9UGF7 316 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 PTPRJQ12913 1337 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 RAMP2O60895 175 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 C8AP07357 584 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 GALTP07902 379 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 CTGFP29279 349 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 CDC25CP30307 473 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 STIP1P31948 543 aaKnown RBP10.47□□□□□ -0.73
SMG6-213ENST00000573166 SCN4AP35499 1836 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 COPS2P61201 443 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 RAB30Q15771 203 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 HGSNATQ68CP4 663 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 MFSD7Q6UXD7 560 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 ZBED8Q8IZ13 594 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 MAB21L3Q8N8X9 362 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 IPMKQ8NFU5 416 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 DEPDC1BQ8WUY9 529 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 CINPQ9BW66 212 aaPredicted RBP10.47□□□□□ -0.73
SMG6-213ENST00000573166 RASSF4Q9H2L5 321 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 SFMBT1Q9UHJ3 866 aa10.47□□□□□ -0.73
SMG6-213ENST00000573166 C9IYK1 514 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 PMPCBO75439 489 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 SOAT2O75908 522 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 JCHAINP01591 159 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 ERBB2P04626 1255 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 CYP1A2P05177 515 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 RARAP10276 462 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 TSTA3Q13630 321 aaPredicted RBP10.46□□□□□ -0.73
SMG6-213ENST00000573166 POLD3Q15054 466 aaPredicted RBP10.46□□□□□ -0.73
SMG6-213ENST00000573166 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.46□□□□□ -0.73
SMG6-213ENST00000573166 APTXQ7Z2E3 356 aaKnown RBP10.46□□□□□ -0.73
SMG6-213ENST00000573166 JAMLQ86YT9 394 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 FAM126BQ8IXS8 530 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 CCT6BQ92526 530 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 SLC9A7Q96T83 725 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 GMIPQ9P107 970 aa10.46□□□□□ -0.73
SMG6-213ENST00000573166 CCDC78A2IDD5 438 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 FGF18O76093 207 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 MTA1Q13330 715 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 HIF1AQ16665 826 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 TMCO2Q7Z6W1 182 aaPredicted RBP10.46□□□□□ -0.74
SMG6-213ENST00000573166 NT5DC3Q86UY8 548 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 JOSD2Q8TAC2 188 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 KATNBL1Q9H079 304 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 ELAC1Q9H777 363 aaKnown RBP10.46□□□□□ -0.74
SMG6-213ENST00000573166 TLK1Q9UKI8 766 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 PLA2G4CQ9UP65 541 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 NAALADL1Q9UQQ1 740 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 COILP38432 576 aaPredicted RBP10.46□□□□□ -0.74
SMG6-213ENST00000573166 JAM2P57087 298 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 SOX4Q06945 474 aaPredicted RBP10.46□□□□□ -0.74
SMG6-213ENST00000573166 MAP3K21Q5TCX8 1036 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 FAXCQ5TGI0 409 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 RAP1GAP2Q684P5 730 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 SYDE1Q6ZW31 735 aaPredicted RBP10.46□□□□□ -0.74
SMG6-213ENST00000573166 FUBP3Q96I24 572 aaKnown RBP eCLIP10.46□□□□□ -0.74
SMG6-213ENST00000573166 VPS39Q96JC1 886 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 TWNKQ96RR1 684 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 PCDHGC3Q9UN70 934 aa10.46□□□□□ -0.74
SMG6-213ENST00000573166 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.46□□□□□ -0.74
SMG6-213ENST00000573166 A0A1W2PQH9 124 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 RCCD1A6NED2 376 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 PYGMP11217 842 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 LRPAP1P30533 357 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 RABGGTBP53611 331 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 VSNL1P62760 191 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 TMED2Q15363 201 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 ATAT1Q5SQI0 421 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 DENND1CQ8IV53 801 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 KRT35Q92764 455 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 NUDCD1Q96RS6 583 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 TLR10Q9BXR5 811 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 TTYH3Q9C0H2 523 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 PTPRHQ9HD43 1115 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 MIOSQ9NXC5 875 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 AJAP1Q9UKB5 411 aaPredicted RBP10.45□□□□□ -0.74
SMG6-213ENST00000573166 OGDHLQ9ULD0 1010 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 PCDHA3Q9Y5H8 950 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 RASGRF2O14827 1237 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 BAIAP3O94812 1187 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 GLI1P08151 1106 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 GPR158Q5T848 1215 aa10.45□□□□□ -0.74
SMG6-213ENST00000573166 DAB2IPQ5VWQ8 1189 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms