RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DHCR24Q15392 516 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 CNGA2Q16280 664 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 MAN2A1Q16706 1144 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 EXOC3L4Q17RC7 722 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ANO4Q32M45 955 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 FSTL4Q6MZW2 842 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 SASS6Q6UVJ0 657 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 LCLAT1Q6UWP7 414 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 Q6ZS52 159 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 DGLUCYQ7Z3D6 616 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 TTC30AQ86WT1 665 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 MIB1Q86YT6 1006 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ARHGEF19Q8IW93 802 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ADGRG2Q8IZP9 1017 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 UBR7Q8N806 425 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 LMO3Q8TAP4 145 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 UBA3Q8TBC4 463 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 RNF139Q8WU17 664 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 KAT5Q92993 513 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 SECISBP2LQ93073 1101 aaKnown RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 CHFRQ96EP1 664 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ULBP1Q9BZM6 244 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 NMUR1Q9HB89 426 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 UBE2TQ9NPD8 197 aaPredicted RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 OLA1Q9NTK5 396 aaKnown RBP8.5□□□□□ -1.05
VPS53-214ENST00000572607 RAB23Q9ULC3 237 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 SLC8A2Q9UPR5 921 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 ZNF510Q9Y2H8 683 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 USP3Q9Y6I4 520 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 CHD6Q8TD26 2715 aa8.5□□□□□ -1.05
VPS53-214ENST00000572607 CHD8Q9HCK8 2581 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 PTPRDP23468 1912 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 CHURC1-FNTBB4DL54 471 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 PAPSS2O95340 614 aaPredicted RBP8.49□□□□□ -1.05
VPS53-214ENST00000572607 TBX18O95935 607 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 APODP05090 189 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 LCP1P13796 627 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 TGM1P22735 817 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 BRD2P25440 801 aaKnown RBP8.49□□□□□ -1.05
VPS53-214ENST00000572607 GNA15P30679 374 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 EIF2DP41214 584 aaKnown RBP8.49□□□□□ -1.05
VPS53-214ENST00000572607 EFEMP1Q12805 493 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 PUM1Q14671 1186 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS53-214ENST00000572607 ARHGAP44Q17R89 818 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 VWA3BQ502W6 1294 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 RAB41Q5JT25 222 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 LY6G5CQ5SRR4 150 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 TRIM65Q6PJ69 517 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 HTR3DQ70Z44 454 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 SCD5Q86SK9 330 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 LONP2Q86WA8 852 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 BBS7Q8IWZ6 715 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 ZNF276Q8N554 614 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 ANKRD20A12PQ8NF67 263 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 RPLP0P6Q8NHW5 317 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 KCTD13Q8WZ19 329 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 XPO6Q96QU8 1125 aaKnown RBP8.49□□□□□ -1.05
VPS53-214ENST00000572607 PNKPQ96T60 521 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 CRACR2AQ9BSW2 395 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 KLF16Q9BXK1 252 aaPredicted RBP8.49□□□□□ -1.05
VPS53-214ENST00000572607 DCLK3Q9C098 648 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 CNGB3Q9NQW8 809 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 ARHGEF4Q9NR80 690 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 OSER1Q9NX31 292 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 APEX2Q9UBZ4 518 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 NUDT5Q9UKK9 219 aa8.49□□□□□ -1.05
VPS53-214ENST00000572607 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS53-214ENST00000572607 SLC12A8A0AV02 714 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 KCNJ18B7U540 433 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 NEDD8-MDP1E9PL57 170 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 MDM4O15151 490 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 HOXC11O43248 304 aaPredicted RBP8.48□□□□□ -1.05
VPS53-214ENST00000572607 SART1O43290 800 aaKnown RBP8.48□□□□□ -1.05
VPS53-214ENST00000572607 THAP12O43422 761 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 WIPF1O43516 503 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 FBXO21O94952 628 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 LETM1O95202 739 aaPredicted RBP8.48□□□□□ -1.05
VPS53-214ENST00000572607 KAT7O95251 611 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 HMBSP08397 361 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 SLC9A1P19634 815 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 EEF1GP26641 437 aaKnown RBP8.48□□□□□ -1.05
VPS53-214ENST00000572607 CNR2P34972 360 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 CHKAP35790 457 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 OPRD1P41143 372 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 GRIA2P42262 883 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 PGFP49763 221 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 RGS7P49802 495 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 ZNF132P52740 706 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 SEC13P55735 322 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 SKOR1P84550 965 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 KDSRQ06136 332 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 GAS6Q14393 721 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 KCNJ12Q14500 433 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 STX1AQ16623 288 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 HEATR6Q6AI08 1181 aaKnown RBP8.48□□□□□ -1.05
VPS53-214ENST00000572607 PM20D1Q6GTS8 502 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 RHBDF2Q6PJF5 856 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 CAMKK1Q8N5S9 505 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 ZBTB44Q8NCP5 570 aa8.48□□□□□ -1.05
VPS53-214ENST00000572607 GPT2Q8TD30 523 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms