RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SLC4A11Q8NBS3 891 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 DEFB124Q8NES8 71 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 IPO4Q8TEX9 1081 aaKnown RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 GATA6Q92908 595 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 JAKMIP2Q96AA8 810 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ERLEC1Q96DZ1 483 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 ARID3AQ99856 593 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 NT5C1AQ9BXI3 368 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 DUSP16Q9BY84 665 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 NIF3L1Q9GZT8 377 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 FBXO44Q9H4M3 255 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 CYP3A43Q9HB55 503 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 CAPN10Q9HC96 672 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 PNPLA8Q9NP80 782 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 POLMQ9NP87 494 aaPredicted RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 DNAJC17Q9NVM6 304 aaKnown RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 CALCOCO1Q9P1Z2 691 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 USP25Q9UHP3 1055 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 RALYQ9UKM9 306 aaKnown RBP7.08□□□□□ -1.28
VPS53-213ENST00000572334 CLEC4EQ9ULY5 219 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 MAPK8IP1Q9UQF2 711 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 RAD54BQ9Y620 910 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 APC2O95996 2303 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 PLXNA2O75051 1894 aa7.08□□□□□ -1.28
VPS53-213ENST00000572334 TULP2O00295 520 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 GFRA2O00451 464 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 CALUO43852 315 aaPredicted RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 GJB3O75712 270 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 PENKP01210 267 aaPredicted RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 PROS1P07225 676 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 P4HA1P13674 534 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 CEACAM1P13688 526 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 HOXB2P14652 356 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 ENGP17813 658 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 CD58P19256 250 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 SYKP43405 635 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 PLA2G4AP47712 749 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 RAD23BP54727 409 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 MFAP3P55082 362 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 FAM193AP78312 1265 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 PDE4CQ08493 712 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 SEMA3BQ13214 749 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 ENPP2Q13822 863 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 GEN1Q17RS7 908 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 DAB2IPQ5VWQ8 1189 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 LYSMD4Q5XG99 296 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 BTBD8Q5XKL5 378 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 TMEM215Q68D42 235 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 GRAMD4Q6IC98 578 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 KRBA2Q6ZNG9 492 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 INTS8Q75QN2 995 aaKnown RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 HSCBQ8IWL3 235 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 SMYD4Q8IYR2 804 aaPredicted RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 GUF1Q8N442 669 aaKnown RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 OR2I1PQ8NGU4 316 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 NDRG1Q92597 394 aaKnown RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 TATDN2Q93075 761 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 EEF2KMTQ96G04 330 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 ZNF419Q96HQ0 510 aaPredicted RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 PIWIL1Q96J94 861 aaKnown RBP7.07□□□□□ -1.28
VPS53-213ENST00000572334 SPACA7Q96KW9 195 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 MRGPRX1Q96LB2 322 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 BBS2Q9BXC9 721 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 TMEM8AQ9HCN3 771 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 CACNA2D2Q9NY47 1150 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 PLK2Q9NYY3 685 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 BCCIPQ9P287 314 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS53-213ENST00000572334 PCDHA5Q9Y5H7 936 aa7.07□□□□□ -1.28
VPS53-213ENST00000572334 ATRXP46100 2492 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 ADAMTS20P59510 1910 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 UPK3BL1B0FP48 263 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 ESPNB1AK53 854 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 KCNJ18B7U540 433 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 UPK3BL2E5RIL1 263 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 MAP3K13O43283 966 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CAPNS1P04632 268 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 SERPINF2P08697 491 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 C7P10643 843 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CD59P13987 128 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 HOXD12P35452 270 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 IL12RB1P42701 662 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 MAPK8P45983 427 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 DGKGP49619 791 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 RPL6Q02878 288 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 ZNF33AQ06730 810 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 LMAN2Q12907 356 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 FOXC1Q12948 553 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 ADAM9Q13443 819 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 UAP1L1Q3KQV9 507 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CBWD6Q4V339 395 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 ZNF394Q53GI3 561 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 HS1BP3Q53T59 392 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CBWD3Q5JTY5 395 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CBWD5Q5RIA9 395 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 C10orf120Q5SQS8 335 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 ARHGAP17Q68EM7 881 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 PM20D1Q6GTS8 502 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 UNQ6494/PRO21346Q6UXR6 183 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 TRMT11Q7Z4G4 463 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 PIGZQ86VD9 579 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms