RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CEP290O15078 2479 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 KDM1AO60341 852 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 TMEM127O75204 238 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 MAFO75444 373 aaPredicted RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 FGF18O76093 207 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 REC8O95072 547 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 SGPL1O95470 568 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 TFRCP02786 760 aaKnown RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 CYP21A2P08686 494 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 HOXC6P09630 235 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 MTHFD1P11586 935 aaKnown RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 ATP1A3P13637 1013 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ATP6V1B1P15313 513 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 PDCP20941 246 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 CNTFP26441 200 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ADORA2AP29274 412 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 NEDD4P46934 1319 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ZNF543Q08ER8 600 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 SMAD4Q13485 552 aaKnown RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 KRT32Q14532 448 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 WTAPQ15007 396 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ASPRV1Q53RT3 343 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 SNRNP48Q6IEG0 339 aaKnown RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 CNKSR3Q6P9H4 555 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ESPNLQ6ZVH7 1005 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 RTN4RL1Q86UN2 441 aaPredicted RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 HEATR4Q86WZ0 1026 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ANKRD35Q8N283 1001 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 GALNT15Q8N3T1 639 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 PRR18Q8N4B5 295 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 OR8H1Q8NGG4 311 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 USP6NLQ92738 828 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 MAML3Q96JK9 1138 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ACAP3Q96P50 834 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 NOX5Q96PH1 765 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 IWS1Q96ST2 819 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 FOXB1Q99853 325 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 MS4A5Q9H3V2 200 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 PLSCR4Q9NRQ2 329 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ORC3Q9UBD5 711 aaPredicted RBP6.63□□□□□ -1.35
VPS53-212ENST00000572259 AASSQ9UDR5 926 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 PLXNA1Q9UIW2 1896 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 ZFP69BQ9UJL9 534 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 WASF3Q9UPY6 502 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 SIK3Q9Y2K2 1263 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 SNX13Q9Y5W8 968 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 GPR45Q9Y5Y3 372 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 HTTP42858 3142 aa6.63□□□□□ -1.35
VPS53-212ENST00000572259 PFASO15067 1338 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 LCHNA4D1U4 455 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 E7EWF7 191 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 RFXAPO00287 272 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 SOAT2O75908 522 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 TPM2P07951 284 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 PDHBP11177 359 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 ALAS1P13196 640 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 MCM5P33992 734 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 PAPOLAP51003 745 aaKnown RBP6.62□□□□□ -1.35
VPS53-212ENST00000572259 FXR1P51114 621 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS53-212ENST00000572259 MRPL12P52815 198 aaKnown RBP6.62□□□□□ -1.35
VPS53-212ENST00000572259 PPP2R5CQ13362 524 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 ADAM9Q13443 819 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 TAF5Q15542 800 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 ZACNQ401N2 412 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 FBXO47Q5MNV8 452 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 PHF19Q5T6S3 580 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 NUGGCQ68CJ6 796 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 SLFN12LQ6IEE8 588 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 SLC30A6Q6NXT4 461 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 BTNL9Q6UXG8 535 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 SYNE3Q6ZMZ3 975 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 RTL10Q7L3V2 364 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 MAEAQ7L5Y9 396 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 GALNT13Q8IUC8 556 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 TMEFF1Q8IYR6 380 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 CEP57L1Q8IYX8 460 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 LINC00482Q8N8I6 264 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 APIPQ96GX9 242 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 TACO1Q9BSH4 297 aaKnown RBP6.62□□□□□ -1.35
VPS53-212ENST00000572259 LRFN3Q9BTN0 628 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 MYL10Q9BUA6 226 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 COLEC11Q9BWP8 271 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 LSG1Q9H089 658 aaKnown RBP6.62□□□□□ -1.35
VPS53-212ENST00000572259 ABCG4Q9H172 646 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 POFUT1Q9H488 388 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 ACAD9Q9H845 621 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 RAVER2Q9HCJ3 691 aaKnown RBP6.62□□□□□ -1.35
VPS53-212ENST00000572259 ABCF3Q9NUQ8 709 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 DNAJC28Q9NX36 388 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 CCPG1Q9ULG6 757 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 KCTD3Q9Y597 815 aa6.62□□□□□ -1.35
VPS53-212ENST00000572259 RBBP6Q7Z6E9 1792 aaKnown RBP6.62□□□□□ -1.35
VPS53-212ENST00000572259 MCM3APO60318 1980 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 GOLGA6L3A6NEY3 463 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 PGPEP1LA6NFU8 196 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 CCDC69A6NI79 296 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 TISP43B9A030 160 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 B9A039 149 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 H7C0S8 307 aa6.61□□□□□ -1.35
VPS53-212ENST00000572259 NDUFS2O75306 463 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms