RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 VTA1Q9NP79 307 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 CPA4Q9UI42 421 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TIMM13Q9Y5L4 95 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 GOT1P17174 413 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 DESP17661 470 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ALDH3A1P30838 453 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 GRM5P41594 1212 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ERFP50548 548 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ZBTB16Q05516 673 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 GALNTL6Q49A17 601 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 PLEKHG4Q58EX7 1191 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 DCAF6Q58WW2 860 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 SLC27A1Q6PCB7 646 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 TRMT10BQ6PF06 316 aaKnown RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 LINC01465Q8N7H1 131 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 AGAP11Q8TF27 550 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 BRI3BPQ8WY22 251 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MAML3Q96JK9 1138 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 LGMNQ99538 433 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 KLC2Q9H0B6 622 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MANSC1Q9H8J5 431 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 ZNF395Q9H8N7 513 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 SENP1Q9P0U3 644 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 MARCOQ9UEW3 520 aaPredicted RBP9.08□□□□□ -0.96
LINC00558-201ENST00000569422 AP4E1Q9UPM8 1137 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 USH1CQ9Y6N9 552 aa9.08□□□□□ -0.96
LINC00558-201ENST00000569422 PAPPA2Q9BXP8 1791 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 IQANK1A0A1B0GTG1 560 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 TREHO43280 583 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 YY1P25490 414 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 NDUFV1P49821 464 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 SESN2P58004 480 aaPredicted RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 YWHAZP63104 245 aaKnown RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 FBXO47Q5MNV8 452 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 FYB2Q5VWT5 728 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 C9orf57Q5W0N0 161 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 KCNT2Q6UVM3 1135 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 CDHR3Q6ZTQ4 885 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 GBP7Q8N8V2 638 aaPredicted RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 SLC35F5Q8WV83 523 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 TBCBQ99426 244 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 TINF2Q9BSI4 451 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 NRDE2Q9H7Z3 1164 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 VRTNQ9H8Y1 702 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 SPON1Q9HCB6 807 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 PAK5Q9P286 719 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 STARD13Q9Y3M8 1113 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 EIF4E1BA6NMX2 242 aaKnown RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 CYB561D2O14569 222 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 MYL3P08590 195 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 SMIM10L2AP0DMW4 78 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 SMIM10L2BP0DMW5 78 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 RARBP10826 455 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 EZRP15311 586 aaKnown RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 AP1B1Q10567 949 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 HIC1Q14526 733 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 KCNJ11Q14654 390 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 ACAP1Q15027 740 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 TAZQ16635 292 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 CCDC92Q53HC0 331 aaPredicted RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 NOTUMQ6P988 496 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 CES3Q6UWW8 571 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 NLRP9Q7RTR0 991 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 GRAMD1AQ96CP6 724 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 POM121Q96HA1 1249 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 ZFP42Q96MM3 310 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 MED10Q9BTT4 135 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 IRAK4Q9NWZ3 460 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 ZFP69BQ9UJL9 534 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 ZMYND8Q9ULU4 1186 aaPredicted RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 G3BP2Q9UN86 482 aaKnown RBP9.07□□□□□ -0.96
LINC00558-201ENST00000569422 TEX264Q9Y6I9 313 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 KAT6AQ92794 2004 aa9.07□□□□□ -0.96
LINC00558-201ENST00000569422 SMIM28A0A1B0GU29 152 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 CFAP73A6NFT4 308 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 KPNA7A9QM74 516 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 H0Y3Z8 333 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 COPEO14579 308 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ZWINTO95229 277 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SOX4Q06945 474 aaPredicted RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ADIGQ0VDE8 80 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 PDAP1Q13442 181 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 OLIG2Q13516 323 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 DUSP28Q4G0W2 176 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 MDH1BQ5I0G3 518 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 RNF43Q68DV7 783 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 CAND1Q86VP6 1230 aaKnown RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 TP53INP2Q8IXH6 220 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 DEFB106AQ8N104 65 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 VPS52Q8N1B4 723 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 BANPQ8N9N5 519 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 ARMC2Q8NEN0 867 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SNX27Q96L92 541 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 SYT17Q9BSW7 474 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 FBXO6Q9NRD1 293 aaPredicted RBP9.06□□□□□ -0.96
LINC00558-201ENST00000569422 PCMTD2Q9NV79 361 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 E7ESA3 106 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 NDC80O14777 642 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 BEST1O76090 585 aa9.06□□□□□ -0.96
LINC00558-201ENST00000569422 UNC5CO95185 931 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms