RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ADAM22Q9P0K1 906 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 CALCOCO1Q9P1Z2 691 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 STRIP2Q9ULQ0 834 aa20.41■□□□□ 0.86
CLN3-225ENST00000566824 HSF2BPO75031 334 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 MFAP3LO75121 409 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 DAB1O75553 588 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 SERPING1P05155 500 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 CORO1AP31146 461 aaKnown RBP20.4■□□□□ 0.86
CLN3-225ENST00000566824 PFKPQ01813 784 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TRIM14Q14142 442 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 ARID5BQ14865 1188 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 PDGFRLQ15198 375 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TRIP4Q15650 581 aaPredicted RBP20.4■□□□□ 0.86
CLN3-225ENST00000566824 GAB4Q2WGN9 574 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TDRD12Q587J7 1177 aaKnown RBP20.4■□□□□ 0.86
CLN3-225ENST00000566824 DCAF6Q58WW2 860 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TXNDC11Q6PKC3 985 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TPRG1Q6ZUI0 275 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TOGARAM2Q6ZUX3 1019 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 BEND5Q7L4P6 421 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 ADGRG2Q8IZP9 1017 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 CSGALNACT1Q8TDX6 532 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 MRFAP1L1Q96HT8 127 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 ANP32EQ9BTT0 268 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 ECT2Q9H8V3 914 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TMEM59LQ9UK28 342 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 PIAS3Q9Y6X2 628 aa20.4■□□□□ 0.86
CLN3-225ENST00000566824 TCRBV5S1A1TA0A578 114 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 CAPN9O14815 690 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 IGLV3-25P01717 112 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 IGLV3-27P01718 113 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 CYP17A1P05093 508 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 GLI1P08151 1106 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 FLT3P36888 993 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 VCPP55072 806 aaKnown RBP20.39■□□□□ 0.85
CLN3-225ENST00000566824 SNX16P57768 344 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 COG7P83436 770 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 ITPRIPL2Q3MIP1 535 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 RHBDF2Q6PJF5 856 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 ZDHHC17Q8IUH5 632 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 MCOLN2Q8IZK6 566 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 EMC1Q8N766 993 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 OR8K1Q8NGG5 319 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 JOSD2Q8TAC2 188 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 FCRL2Q96LA5 508 aaPredicted RBP20.39■□□□□ 0.85
CLN3-225ENST00000566824 FOXQ1Q9C009 403 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 METTL5Q9NRN9 209 aaKnown RBP20.39■□□□□ 0.85
CLN3-225ENST00000566824 ABHD10Q9NUJ1 306 aa20.39■□□□□ 0.85
CLN3-225ENST00000566824 AGO1Q9UL18 857 aaKnown RBP20.39■□□□□ 0.85
CLN3-225ENST00000566824 HBS1LQ9Y450 684 aaKnown RBP20.39■□□□□ 0.85
CLN3-225ENST00000566824 MTF2Q9Y483 593 aaPredicted RBP20.39■□□□□ 0.85
CLN3-225ENST00000566824 A0A087X0T9 212 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 TRUB2O95900 331 aaKnown RBP20.38■□□□□ 0.85
CLN3-225ENST00000566824 FAM228BP0C875 321 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 EIF4A3P38919 411 aaKnown RBP20.38■□□□□ 0.85
CLN3-225ENST00000566824 KPNA1P52294 538 aaPredicted RBP20.38■□□□□ 0.85
CLN3-225ENST00000566824 EIF4EBP2Q13542 120 aaPredicted RBP20.38■□□□□ 0.85
CLN3-225ENST00000566824 RAB6CQ53S08 254 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 CWF19L1Q69YN2 538 aaKnown RBP20.38■□□□□ 0.85
CLN3-225ENST00000566824 TMEM25Q86YD3 366 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 DENND1CQ8IV53 801 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 ATP2A3Q93084 1043 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 CHP1Q99653 195 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 RAB6CQ9H0N0 254 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 TBC1D17Q9HA65 648 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 ADAMTS1Q9UHI8 967 aa20.38■□□□□ 0.85
CLN3-225ENST00000566824 SYNJ2BP-COX16A0A087WUM0 186 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 SPECC1L-ADORA2AF8WAN1 911 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 ATMINO43313 823 aaPredicted RBP20.37■□□□□ 0.85
CLN3-225ENST00000566824 RRM1P23921 792 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 GJA4P35212 333 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 SCNN1AP37088 669 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 TBX4P57082 545 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 STARD6P59095 220 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 C1QBPQ07021 282 aaKnown RBP20.37■□□□□ 0.85
CLN3-225ENST00000566824 DHCR24Q15392 516 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 LY6G5CQ5SRR4 150 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 KIAA1958Q8N8K9 716 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 TC2NQ8N9U0 490 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 MSANTD4Q8NCY6 345 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 FLCNQ8NFG4 579 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 PLD4Q96BZ4 506 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 SLC39A13Q96H72 371 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN3-225ENST00000566824 DDX23Q9BUQ8 820 aaKnown RBP20.37■□□□□ 0.85
CLN3-225ENST00000566824 FBRSL1Q9HCM7 1045 aaKnown RBP20.37■□□□□ 0.85
CLN3-225ENST00000566824 COX16Q9P0S2 106 aa20.37■□□□□ 0.85
CLN3-225ENST00000566824 LSM7Q9UK45 103 aaKnown RBP20.37■□□□□ 0.85
CLN3-225ENST00000566824 GOLGA6L7A0A1B0GV03 622 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 AKR1B15C9JRZ8 316 aaPredicted RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 TRDMT1O14717 391 aaKnown RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 SLC9A3R1O14745 358 aaPredicted RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 IRAK2O43187 625 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 PI15O43692 258 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 ADCY5O95622 1261 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 FTLP02792 175 aaPredicted RBP20.36■□□□□ 0.85
CLN3-225ENST00000566824 CALB1P05937 261 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 CTHP32929 405 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 NOS2P35228 1153 aa20.36■□□□□ 0.85
CLN3-225ENST00000566824 MATKP42679 507 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms