RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CALCOCO1Q9P1Z2 691 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 RASAL2Q9UJF2 1139 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 STRIP2Q9ULQ0 834 aa19.66■□□□□ 0.74
CLN3-218ENST00000565688 MAP1BP46821 2468 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 PRRT4C9JH25 899 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 CDX4O14627 284 aaPredicted RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 CISD3P0C7P0 127 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 WASP42768 502 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 NOVA1P51513 510 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 YWHAEP62258 255 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 RPL6Q02878 288 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 EFEMP1Q12805 493 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 DCAF17Q5H9S7 520 aaPredicted RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 RAB41Q5JT25 222 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 TOGARAM2Q6ZUX3 1019 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 RSRC2Q7L4I2 434 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 PIGZQ86VD9 579 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 IPO4Q8TEX9 1081 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 BHMTQ93088 406 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 HOOK1Q9UJC3 728 aaKnown RBP19.65■□□□□ 0.74
CLN3-218ENST00000565688 FBXO10Q9UK96 956 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 PILRBQ9UKJ0 227 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 SLC27A6Q9Y2P4 619 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 COQ4Q9Y3A0 265 aa19.65■□□□□ 0.74
CLN3-218ENST00000565688 NPC1O15118 1278 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 PENKP01210 267 aaPredicted RBP19.64■□□□□ 0.73
CLN3-218ENST00000565688 KLKB1P03952 638 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 YWHAGP61981 247 aaKnown RBP eCLIP19.64■□□□□ 0.73
CLN3-218ENST00000565688 LRRC63Q05C16 580 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 E2F5Q15329 346 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 CBWD6Q4V339 395 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 CBWD3Q5JTY5 395 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 CBWD5Q5RIA9 395 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 PEAR1Q5VY43 1037 aaPredicted RBP19.64■□□□□ 0.73
CLN3-218ENST00000565688 SLC23A3Q6PIS1 610 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 RABEPKQ7Z6M1 372 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 ZC3H3Q8IXZ2 948 aaKnown RBP19.64■□□□□ 0.73
CLN3-218ENST00000565688 CEP76Q8TAP6 659 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 TATDN2Q93075 761 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 ACOX2Q99424 681 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 CD248Q9HCU0 757 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 PLK2Q9NYY3 685 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 MARCH2Q9P0N8 246 aa19.64■□□□□ 0.73
CLN3-218ENST00000565688 ARMCX3Q9UH62 379 aaPredicted RBP19.64■□□□□ 0.73
CLN3-218ENST00000565688 ZBED1O96006 694 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 CYBBP04839 570 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 CEACAM1P13688 526 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 NDUFV2P19404 249 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 CSRP1P21291 193 aaKnown RBP19.63■□□□□ 0.73
CLN3-218ENST00000565688 CORO1AP31146 461 aaKnown RBP19.63■□□□□ 0.73
CLN3-218ENST00000565688 TKTL1P51854 596 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 BCAT1P54687 386 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 CUL2Q13617 745 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 SGO2Q562F6 1265 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 SH3PXD2AQ5TCZ1 1133 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 ANKRD40Q6AI12 368 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 PM20D1Q6GTS8 502 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 TMEM74BQ9NUR3 256 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 HESX1Q9UBX0 185 aa19.63■□□□□ 0.73
CLN3-218ENST00000565688 USP24Q9UPU5 2620 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 IGHV1OR15-9A0A0B4J2B8 117 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 XPO1O14980 1071 aaKnown RBP19.62■□□□□ 0.73
CLN3-218ENST00000565688 HMBSP08397 361 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 ITPKAP23677 461 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 ZNF132P52740 706 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 STARD3Q14849 445 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 ST3GAL2Q16842 350 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 DUOXA1Q1HG43 343 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 GOLGA7BQ2TAP0 167 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 FYB2Q5VWT5 728 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 KIAA1211LQ6NV74 962 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 CPXM2Q8N436 756 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 SPATA20Q8TB22 786 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 UCMAQ8WVF2 138 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 SMARCE1Q969G3 411 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 PLD4Q96BZ4 506 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 OLA1Q9NTK5 396 aaKnown RBP19.62■□□□□ 0.73
CLN3-218ENST00000565688 CACNA2D2Q9NY47 1150 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 AGO1Q9UL18 857 aaKnown RBP19.62■□□□□ 0.73
CLN3-218ENST00000565688 KIAA1257Q9ULG3 409 aa19.62■□□□□ 0.73
CLN3-218ENST00000565688 TNRC6BQ9UPQ9 1833 aaKnown RBP19.62■□□□□ 0.73
CLN3-218ENST00000565688 SLC12A8A0AV02 714 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 CFIP05156 583 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 ENGP17813 658 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 TBXAS1P24557 533 aaPredicted RBP19.61■□□□□ 0.73
CLN3-218ENST00000565688 MFAP3P55082 362 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 ZNF33AQ06730 810 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 BST2Q10589 180 aaKnown RBP19.61■□□□□ 0.73
CLN3-218ENST00000565688 STIM1Q13586 685 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 UAP1L1Q3KQV9 507 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 DENND1CQ8IV53 801 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 ENGASEQ8NFI3 743 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 SLC35C1Q96A29 364 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 MRGPRX1Q96LB2 322 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 TIGD1Q96MW7 591 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 IPO9Q96P70 1041 aaKnown RBP19.61■□□□□ 0.73
CLN3-218ENST00000565688 SLC2A11Q9BYW1 496 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 LRRC4Q9HBW1 653 aa19.61■□□□□ 0.73
CLN3-218ENST00000565688 METTL14Q9HCE5 456 aaKnown RBP19.61■□□□□ 0.73
CLN3-218ENST00000565688 TSPAN16Q9UKR8 245 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms