RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SFMBT2Q5VUG0 894 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 CC2D1AQ6P1N0 951 aaPredicted RBP18.07■□□□□ 0.48
CLN3-217ENST00000565354 LONP2Q86WA8 852 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 MFSD6LQ8IWD5 586 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 MSANTD4Q8NCY6 345 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 STK32AQ8WU08 396 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 USP13Q92995 863 aaPredicted RBP18.07■□□□□ 0.48
CLN3-217ENST00000565354 SLC22A12Q96S37 553 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 EDEM3Q9BZQ6 932 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 TRIM5Q9C035 493 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 RBSNQ9H1K0 784 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 CCSER2Q9H7U1 834 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 NMUR1Q9HB89 426 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLN3-217ENST00000565354 CPQQ9Y646 472 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 ANAPC1Q9H1A4 1944 aa18.07■□□□□ 0.48
CLN3-217ENST00000565354 K7ESF4 209 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 ARNTLO00327 626 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 SART1O43290 800 aaKnown RBP18.06■□□□□ 0.48
CLN3-217ENST00000565354 COCHO43405 550 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 MMEP08473 750 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 TPM1P09493 284 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 ATP5C1P36542 298 aaKnown RBP18.06■□□□□ 0.48
CLN3-217ENST00000565354 PBX1P40424 430 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 DAOAP59103 153 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 CDR2Q01850 454 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 LRRC32Q14392 662 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 C10orf120Q5SQS8 335 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 IL31Q6EBC2 164 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 PM20D1Q6GTS8 502 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 C1orf228Q6PIY5 440 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 DDX42Q86XP3 938 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-217ENST00000565354 RNF139Q8WU17 664 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 SLC20A1Q8WUM9 679 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 CPLX3Q8WVH0 158 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 NDRG1Q92597 394 aaKnown RBP18.06■□□□□ 0.48
CLN3-217ENST00000565354 MSANTD3Q96H12 275 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 PPP1R13BQ96KQ4 1090 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 RNF38Q9H0F5 515 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 CYLDQ9NQC7 956 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 SMPD4Q9NXE4 827 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 CLIC5Q9NZA1 410 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 ARHGAP26Q9UNA1 814 aa18.06■□□□□ 0.48
CLN3-217ENST00000565354 E5RJQ4 531 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 LSM8O95777 96 aaKnown RBP18.05■□□□□ 0.48
CLN3-217ENST00000565354 PMLP29590 882 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 SLC7A9P82251 487 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 GOLGA8FQ08AF8 430 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 GOLGA8DPQ0D2H9 430 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 ARHGAP29Q52LW3 1261 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 HEATR6Q6AI08 1181 aaKnown RBP18.05■□□□□ 0.48
CLN3-217ENST00000565354 TRIM72Q6ZMU5 477 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 SCD5Q86SK9 330 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 SCML4Q8N228 414 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 FAM160A2Q8N612 972 aaPredicted RBP18.05■□□□□ 0.48
CLN3-217ENST00000565354 CSGALNACT1Q8TDX6 532 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 SH3RF2Q8TEC5 729 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 IRGQQ8WZA9 623 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 BAP1Q92560 729 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 FAM149B1Q96BN6 582 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 SLC4A5Q9BY07 1137 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 NUCKS1Q9H1E3 243 aaKnown RBP18.05■□□□□ 0.48
CLN3-217ENST00000565354 RBM12Q9NTZ6 932 aaKnown RBP18.05■□□□□ 0.48
CLN3-217ENST00000565354 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLN3-217ENST00000565354 RASAL2Q9UJF2 1139 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 DNMT3LQ9UJW3 386 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 NUDT5Q9UKK9 219 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 CCL26Q9Y258 94 aa18.05■□□□□ 0.48
CLN3-217ENST00000565354 ITIH6Q6UXX5 1313 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 A0A1W2PQJ5 194 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 OLFM2O95897 454 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 IRF1P10914 325 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 PGFP49763 221 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 LIMK1P53667 647 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 MTF1Q14872 753 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 OR6B2Q6IFH4 312 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 CEP68Q76N32 757 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 ERICH1Q86X53 443 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 SCUBE3Q8IX30 993 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 RSPRY1Q96DX4 576 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 TTYH3Q9C0H2 523 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 C8orf33Q9H7E9 229 aaPredicted RBP18.04■□□□□ 0.48
CLN3-217ENST00000565354 ABCC13Q9NSE7 274 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 OLA1Q9NTK5 396 aaKnown RBP18.04■□□□□ 0.48
CLN3-217ENST00000565354 OSER1Q9NX31 292 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 CYTH4Q9UIA0 394 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 NOCTQ9UK39 431 aaKnown RBP18.04■□□□□ 0.48
CLN3-217ENST00000565354 STRIP2Q9ULQ0 834 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 LUC7L2Q9Y383 392 aaKnown RBP18.04■□□□□ 0.48
CLN3-217ENST00000565354 SH3BP1Q9Y3L3 701 aa18.04■□□□□ 0.48
CLN3-217ENST00000565354 KIF26AQ9ULI4 1882 aaPredicted RBP18.03■□□□□ 0.48
CLN3-217ENST00000565354 FAM170AA1A519 330 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 YJEFN3A6XGL0 299 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 E7ENQ6 273 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 LEFTY2O00292 366 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 CAPN9O14815 690 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 CHADO15335 359 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 TBX18O95935 607 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 LTFP02788 710 aa18.03■□□□□ 0.48
CLN3-217ENST00000565354 HOXA6P31267 233 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms