RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 BST2Q10589 180 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 KCNH2Q12809 1159 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 PAK1Q13153 545 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 ELF2Q15723 593 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 USP39Q53GS9 565 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 EGFLAMQ63HQ2 1017 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 PMS2CLQ68D20 193 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 TMEM270Q6UE05 265 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 RRAGAQ7L523 313 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 ARHGAP18Q8N392 663 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 PPM1KQ8N3J5 372 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 KCNV2Q8TDN2 545 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 RLN3Q8WXF3 142 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 XPO6Q96QU8 1125 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 CDK5RAP1Q96SZ6 601 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 ACOX2Q99424 681 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 LRRC4Q9HBW1 653 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 CD248Q9HCU0 757 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 MARCH2Q9P0N8 246 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 WDR35Q9P2L0 1181 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 HESX1Q9UBX0 185 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 FBXO10Q9UK96 956 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 AGO1Q9UL18 857 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 KIAA1257Q9ULG3 409 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 PCDHB4Q9Y5E5 795 aa11.35□□□□□ -0.59
VPS39-208ENST00000564994 TPRP12270 2363 aaKnown RBP11.35□□□□□ -0.59
VPS39-208ENST00000564994 A0A1W2PQF6 199 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 TCRBV21S2A2A0A5A6 115 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 SLC12A8A0AV02 714 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 BICDL2A1A5D9 508 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 BCLAF3A2AJT9 711 aaKnown RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 YJEFN3A6XGL0 299 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 E7ENQ6 273 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 P4HA2O15460 535 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 ALDH1A2O94788 518 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 PENKP01210 267 aaPredicted RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 PAEPP09466 180 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 BRD2P25440 801 aaKnown RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 NTSR1P30989 418 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 P2RY2P41231 377 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 DGKGP49619 791 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 ZNF132P52740 706 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 CREB5Q02930 508 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 MAP7D1Q3KQU3 841 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 PREPLQ4J6C6 727 aaPredicted RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 FYB2Q5VWT5 728 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 TCEAL6Q6IPX3 200 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 LCLAT1Q6UWP7 414 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 RSRC2Q7L4I2 434 aaKnown RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 DENND1CQ8IV53 801 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 EHBP1Q8NDI1 1231 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 SLC35F5Q8WV83 523 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 HMGB4Q8WW32 186 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 KCTD13Q8WZ19 329 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 EDEM1Q92611 657 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 TCEAL3Q969E4 200 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 KREMEN1Q96MU8 473 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 MED15Q96RN5 788 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 SRRTQ9BXP5 876 aaKnown RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 POLMQ9NP87 494 aaPredicted RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 VPS45Q9NRW7 570 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 MBD1Q9UIS9 605 aaPredicted RBP11.34□□□□□ -0.59
VPS39-208ENST00000564994 CLEC4EQ9ULY5 219 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS39-208ENST00000564994 ZNF510Q9Y2H8 683 aa11.34□□□□□ -0.59
VPS39-208ENST00000564994 CKAP5Q14008 2032 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 PIK3R2O00459 728 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 FOXD2O60548 495 aaPredicted RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 GNA14O95837 355 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 SETSIPP0DME0 302 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 LCP1P13796 627 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 HOXB2P14652 356 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 GABRG2P18507 467 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 RGS7P49802 495 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 DAOAP59103 153 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 UBE2HP62256 183 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 TRIP4Q15650 581 aaPredicted RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 CNGA2Q16280 664 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 CAMK4Q16566 473 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 AASDHQ4L235 1098 aaPredicted RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 BSPRYQ5W0U4 402 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 KIAA1211LQ6NV74 962 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 PMF1Q6P1K2 205 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 NUDT18Q6ZVK8 323 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 TRMT11Q7Z4G4 463 aaKnown RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 FMNL3Q8IVF7 1028 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 FAM217AQ8IXS0 508 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 C12orf50Q8NA57 414 aaPredicted RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 RBBP8NLQ8NC74 664 aaPredicted RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 ERLEC1Q96DZ1 483 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 IPO9Q96P70 1041 aaKnown RBP11.33□□□□□ -0.6
VPS39-208ENST00000564994 GABRG3Q99928 467 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 DCLK3Q9C098 648 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 CNGB3Q9NQW8 809 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 KIAA1468Q9P260 1216 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 BCCIPQ9P287 314 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS39-208ENST00000564994 SFMBT1Q9UHJ3 866 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 STRIP2Q9ULQ0 834 aa11.33□□□□□ -0.6
VPS39-208ENST00000564994 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS39-208ENST00000564994 CHD8Q9HCK8 2581 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms