RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FBRSL1Q9HCM7 1045 aaKnown RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 LIMA1Q9UHB6 759 aaKnown RBP14.01□□□□□ -0.17
CLK3-216ENST00000564468 R4GN57 208 aa14.01□□□□□ -0.17
CLK3-216ENST00000564468 CEP250Q9BV73 2442 aa14□□□□□ -0.17
CLK3-216ENST00000564468 MED19A0JLT2 244 aaPredicted RBP14□□□□□ -0.17
CLK3-216ENST00000564468 LRRC10BA6NIK2 292 aa14□□□□□ -0.17
CLK3-216ENST00000564468 GREM1O60565 184 aa14□□□□□ -0.17
CLK3-216ENST00000564468 RNF40O75150 1001 aa14□□□□□ -0.17
CLK3-216ENST00000564468 CORO1AP31146 461 aaKnown RBP14□□□□□ -0.17
CLK3-216ENST00000564468 GRIA2P42262 883 aa14□□□□□ -0.17
CLK3-216ENST00000564468 HARS2P49590 506 aaKnown RBP14□□□□□ -0.17
CLK3-216ENST00000564468 GAS6Q14393 721 aa14□□□□□ -0.17
CLK3-216ENST00000564468 GAB4Q2WGN9 574 aa14□□□□□ -0.17
CLK3-216ENST00000564468 ANO6Q4KMQ2 910 aa14□□□□□ -0.17
CLK3-216ENST00000564468 MSANTD2Q6P1R3 559 aa14□□□□□ -0.17
CLK3-216ENST00000564468 Q6ZS52 159 aa14□□□□□ -0.17
CLK3-216ENST00000564468 BEND5Q7L4P6 421 aa14□□□□□ -0.17
CLK3-216ENST00000564468 TMEM110Q86TL2 294 aa14□□□□□ -0.17
CLK3-216ENST00000564468 TMEM25Q86YD3 366 aa14□□□□□ -0.17
CLK3-216ENST00000564468 FMNL3Q8IVF7 1028 aa14□□□□□ -0.17
CLK3-216ENST00000564468 AOPEPQ8N6M6 819 aa14□□□□□ -0.17
CLK3-216ENST00000564468 NDRG1Q92597 394 aaKnown RBP14□□□□□ -0.17
CLK3-216ENST00000564468 EDEM1Q92611 657 aa14□□□□□ -0.17
CLK3-216ENST00000564468 WBP2Q969T9 261 aa14□□□□□ -0.17
CLK3-216ENST00000564468 BBS2Q9BXC9 721 aa14□□□□□ -0.17
CLK3-216ENST00000564468 MIS12Q9H081 205 aa14□□□□□ -0.17
CLK3-216ENST00000564468 MARK1Q9P0L2 795 aa14□□□□□ -0.17
CLK3-216ENST00000564468 DEC1Q9P2X7 70 aa14□□□□□ -0.17
CLK3-216ENST00000564468 FHOD1Q9Y613 1164 aa14□□□□□ -0.17
CLK3-216ENST00000564468 RALGAPA1Q6GYQ0 2036 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 A0A0A0MRY4 1105 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 PIK3R2O00459 728 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 CAPN9O14815 690 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 KAT7O95251 611 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 LATS1O95835 1130 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 CYBBP04839 570 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 HMBSP08397 361 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 ZNF18P17022 549 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 HOXA6P31267 233 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 CLCN1P35523 988 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 TNFRSF4P43489 277 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 ZNF445P59923 1031 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 MRPS21P82921 87 aaKnown RBP13.99□□□□□ -0.17
CLK3-216ENST00000564468 SATB1Q01826 763 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 PDCLQ13371 301 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 TRIP4Q15650 581 aaPredicted RBP13.99□□□□□ -0.17
CLK3-216ENST00000564468 SKOR2Q2VWA4 1001 aaPredicted RBP13.99□□□□□ -0.17
CLK3-216ENST00000564468 DPY19L2P1Q6NXN4 242 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 TPGS1Q6ZTW0 290 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 UNC45BQ8IWX7 931 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 SCUBE3Q8IX30 993 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 GPR161Q8N6U8 529 aaKnown RBP13.99□□□□□ -0.17
CLK3-216ENST00000564468 ZBTB44Q8NCP5 570 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 NELL1Q92832 810 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 FAM149B1Q96BN6 582 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 PCMTD1Q96MG8 357 aaPredicted RBP13.99□□□□□ -0.17
CLK3-216ENST00000564468 NAA15Q9BXJ9 866 aaKnown RBP13.99□□□□□ -0.17
CLK3-216ENST00000564468 ACP6Q9NPH0 428 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 ARHGEF4Q9NR80 690 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 SLC8A2Q9UPR5 921 aa13.99□□□□□ -0.17
CLK3-216ENST00000564468 LGALS16A8MUM7 142 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 E5RJQ4 531 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 NEDD8-MDP1E9PL57 170 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 TULP3O75386 442 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 GABBR2O75899 941 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 NCAM1P13591 858 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 TYRP14679 529 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 ZNF165P49910 485 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 UBXN1Q04323 297 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 NCAPHQ15003 741 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 HSF5Q4G112 596 aaPredicted RBP13.98□□□□□ -0.17
CLK3-216ENST00000564468 EFHC1Q5JVL4 640 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 NAIF1Q69YI7 327 aaPredicted RBP13.98□□□□□ -0.17
CLK3-216ENST00000564468 TSSK4Q6SA08 328 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 SYT13Q7L8C5 426 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 SLC47A2Q86VL8 602 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 DENND1CQ8IV53 801 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 ETFBKMTQ8IXQ9 262 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 CPXM2Q8N436 756 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 CAMKK1Q8N5S9 505 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 TMEM35BQ8NCS4 154 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 NEK11Q8NG66 645 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 RPLP0P6Q8NHW5 317 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 KCNV2Q8TDN2 545 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 IPO4Q8TEX9 1081 aaKnown RBP13.98□□□□□ -0.17
CLK3-216ENST00000564468 PPP1R13BQ96KQ4 1090 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 SERPINB11Q96P15 392 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 SPAG5Q96R06 1193 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 POPDC2Q9HBU9 364 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 DLL3Q9NYJ7 618 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 SFMBT1Q9UHJ3 866 aa13.98□□□□□ -0.17
CLK3-216ENST00000564468 AJAP1Q9UKB5 411 aaPredicted RBP13.98□□□□□ -0.17
CLK3-216ENST00000564468 AGO1Q9UL18 857 aaKnown RBP13.98□□□□□ -0.17
CLK3-216ENST00000564468 OTOGLQ3ZCN5 2332 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CCDC163A0A0D9SF12 145 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 TBC1D3BA6NDS4 549 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 F8VZ95 297 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 K7EQS6 105 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CACNG3O60359 315 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CAVIN2O95810 425 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms