RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 PLK2Q9NYY3 685 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 ARMCX3Q9UH62 379 aaPredicted RBP17.02■□□□□ 0.32
SNX1-213ENST00000561026 RASAL2Q9UJF2 1139 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 FBXO10Q9UK96 956 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 NUP205Q92621 2012 aa17.02■□□□□ 0.32
SNX1-213ENST00000561026 PENKP01210 267 aaPredicted RBP17.02■□□□□ 0.31
SNX1-213ENST00000561026 CHKAP35790 457 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 PTGER3P43115 390 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 TKTL1P51854 596 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 YWHAGP61981 247 aaKnown RBP eCLIP17.02■□□□□ 0.31
SNX1-213ENST00000561026 EFEMP1Q12805 493 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 BECN1Q14457 450 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 N4BP2L1Q5TBK1 243 aaPredicted RBP17.02■□□□□ 0.31
SNX1-213ENST00000561026 GABRG3Q99928 467 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 DCLK3Q9C098 648 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 CD248Q9HCU0 757 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 MARCH2Q9P0N8 246 aa17.02■□□□□ 0.31
SNX1-213ENST00000561026 HOOK1Q9UJC3 728 aaKnown RBP17.02■□□□□ 0.31
SNX1-213ENST00000561026 TRIM49BA6NDI0 452 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 CDX4O14627 284 aaPredicted RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 ZBTB24O43167 697 aaPredicted RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 KCNK5O95279 499 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 ZBED1O96006 694 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 HMBSP08397 361 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 CORO1AP31146 461 aaKnown RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 GOLGA7BQ2TAP0 167 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 DAB2IPQ5VWQ8 1189 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 KIAA1211LQ6NV74 962 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 RSRC2Q7L4I2 434 aaKnown RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 ARMCX6Q7L4S7 300 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 SYT12Q8IV01 421 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 IPO4Q8TEX9 1081 aaKnown RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 TMEM74BQ9NUR3 256 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 CALCOCO1Q9P1Z2 691 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 EVLQ9UI08 416 aaPredicted RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 AGO1Q9UL18 857 aaKnown RBP17.01■□□□□ 0.31
SNX1-213ENST00000561026 STRIP2Q9ULQ0 834 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 SLC27A6Q9Y2P4 619 aa17.01■□□□□ 0.31
SNX1-213ENST00000561026 TULP2O00295 520 aa17■□□□□ 0.31
SNX1-213ENST00000561026 GFRA2O00451 464 aa17■□□□□ 0.31
SNX1-213ENST00000561026 PSMA7O14818 248 aa17■□□□□ 0.31
SNX1-213ENST00000561026 XPO1O14980 1071 aaKnown RBP17■□□□□ 0.31
SNX1-213ENST00000561026 BCAT1P54687 386 aa17■□□□□ 0.31
SNX1-213ENST00000561026 YWHAEP62258 255 aaKnown RBP17■□□□□ 0.31
SNX1-213ENST00000561026 PDE4CQ08493 712 aa17■□□□□ 0.31
SNX1-213ENST00000561026 SGO2Q562F6 1265 aa17■□□□□ 0.31
SNX1-213ENST00000561026 FYB2Q5VWT5 728 aa17■□□□□ 0.31
SNX1-213ENST00000561026 LYSMD4Q5XG99 296 aa17■□□□□ 0.31
SNX1-213ENST00000561026 SLC36A4Q6YBV0 504 aa17■□□□□ 0.31
SNX1-213ENST00000561026 ULBP1Q9BZM6 244 aa17■□□□□ 0.31
SNX1-213ENST00000561026 METTL14Q9HCE5 456 aaKnown RBP17■□□□□ 0.31
SNX1-213ENST00000561026 TMEM9BQ9NQ34 198 aa17■□□□□ 0.31
SNX1-213ENST00000561026 HESX1Q9UBX0 185 aa17■□□□□ 0.31
SNX1-213ENST00000561026 TSPAN16Q9UKR8 245 aa17■□□□□ 0.31
SNX1-213ENST00000561026 CACNA1BQ00975 2339 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 SLC12A8A0AV02 714 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 AP5Z1O43299 807 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 ZNF217O75362 1048 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 CD19P15391 556 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 NDUFV2P19404 249 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 TBXAS1P24557 533 aaPredicted RBP16.99■□□□□ 0.31
SNX1-213ENST00000561026 PMLP29590 882 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 DPP6P42658 865 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 RPL6Q02878 288 aaKnown RBP16.99■□□□□ 0.31
SNX1-213ENST00000561026 BST2Q10589 180 aaKnown RBP16.99■□□□□ 0.31
SNX1-213ENST00000561026 LRMPQ12912 555 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 STIM1Q13586 685 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 TRIM61Q5EBN2 209 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 PSAPL1Q6NUJ1 521 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 BHLHA9Q7RTU4 235 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 DENND1CQ8IV53 801 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 ELOA2Q8IYF1 753 aaPredicted RBP16.99■□□□□ 0.31
SNX1-213ENST00000561026 UBR7Q8N806 425 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 NDRG1Q92597 394 aaKnown RBP16.99■□□□□ 0.31
SNX1-213ENST00000561026 DHTKD1Q96HY7 919 aaPredicted RBP16.99■□□□□ 0.31
SNX1-213ENST00000561026 LRRC4Q9HBW1 653 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 CACNA2D2Q9NY47 1150 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 PILRBQ9UKJ0 227 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 KIAA1257Q9ULG3 409 aa16.99■□□□□ 0.31
SNX1-213ENST00000561026 WASH3PC4AMC7 463 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 PMM2O15305 246 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 VDRP11473 427 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 ITPKAP23677 461 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 FMO5P49326 533 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 MFAP3P55082 362 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 LMAN2Q12907 356 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 ISM2Q6H9L7 571 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 CPXM2Q8N436 756 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 UBA3Q8TBC4 463 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 ERLEC1Q96DZ1 483 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 MRGPRX1Q96LB2 322 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 CEP63Q96MT8 703 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 IPO9Q96P70 1041 aaKnown RBP16.98■□□□□ 0.31
SNX1-213ENST00000561026 NUSAP1Q9BXS6 441 aaKnown RBP16.98■□□□□ 0.31
SNX1-213ENST00000561026 ANGPTL2Q9UKU9 493 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 RAD54BQ9Y620 910 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 PLXND1Q9Y4D7 1925 aa16.98■□□□□ 0.31
SNX1-213ENST00000561026 IGHV1OR15-9A0A0B4J2B8 117 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 O00370 1275 aa16.97■□□□□ 0.31
SNX1-213ENST00000561026 CYBBP04839 570 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms