RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 STC2O76061 302 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 PSMC3P17980 439 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 TDGQ13569 410 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 PLEKHA7Q6IQ23 1121 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 DNAJC24Q6P3W2 148 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 CCDC42Q96M95 316 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 TRIM62Q9BVG3 475 aa22.73■■□□□ 1.23
SNX1-210ENST00000560260 SOWAHDA6NJG2 315 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 ABCB4P21439 1286 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 NOS2P35228 1153 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 MATKP42679 507 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 EIF4EBP2Q13542 120 aaPredicted RBP22.72■■□□□ 1.23
SNX1-210ENST00000560260 ARHGEF26Q96DR7 871 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 NPY6RQ99463 290 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 DDX23Q9BUQ8 820 aaKnown RBP22.72■■□□□ 1.23
SNX1-210ENST00000560260 SELENOOQ9BVL4 669 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 THAP2Q9H0W7 228 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP22.72■■□□□ 1.23
SNX1-210ENST00000560260 CNOT8Q9UFF9 292 aaKnown RBP22.72■■□□□ 1.23
SNX1-210ENST00000560260 WNT6Q9Y6F9 365 aa22.72■■□□□ 1.23
SNX1-210ENST00000560260 C2CD4BA6NLJ0 364 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 ARNTLO00327 626 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 IRAK2O43187 625 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 TRUB2O95900 331 aaKnown RBP22.71■■□□□ 1.23
SNX1-210ENST00000560260 IGLV3-27P01718 113 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 KLKB1P03952 638 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 GDI1P31150 447 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 RFC1P35251 1148 aaPredicted RBP22.71■■□□□ 1.23
SNX1-210ENST00000560260 GALCP54803 685 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 RPL7AP62424 266 aaKnown RBP22.71■■□□□ 1.23
SNX1-210ENST00000560260 GPC5P78333 572 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 TRIP4Q15650 581 aaPredicted RBP22.71■■□□□ 1.23
SNX1-210ENST00000560260 RAD9BQ6WBX8 426 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 Q6ZNB5 142 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 ARCQ7LC44 396 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 DDX42Q86XP3 938 aaKnown RBP eCLIP22.71■■□□□ 1.23
SNX1-210ENST00000560260 SERPINB11Q96P15 392 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 TRMT61BQ9BVS5 477 aaKnown RBP22.71■■□□□ 1.23
SNX1-210ENST00000560260 DUSP12Q9UNI6 340 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 SORCS3Q9UPU3 1222 aa22.71■■□□□ 1.23
SNX1-210ENST00000560260 HBS1LQ9Y450 684 aaKnown RBP22.71■■□□□ 1.23
SNX1-210ENST00000560260 SIGLEC16A6NMB1 481 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 KRT3P12035 628 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 SULT1E1P49888 294 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 OGDHQ02218 1023 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 MAMLD1Q13495 774 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 RAB6CQ53S08 254 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 IER5LQ5T953 404 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 TRIM68Q6AZZ1 485 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 RXFP2Q8WXD0 754 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 NT5C3BQ969T7 300 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 SLC39A13Q96H72 371 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 FCRL2Q96LA5 508 aaPredicted RBP22.7■■□□□ 1.22
SNX1-210ENST00000560260 CFAP57Q96MR6 1250 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 MCEEQ96PE7 176 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 TBCBQ99426 244 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 RAB6CQ9H0N0 254 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 FAM204AQ9H8W3 233 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 TTC28Q96AY4 2481 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 TICRRQ7Z2Z1 1910 aa22.7■■□□□ 1.22
SNX1-210ENST00000560260 TRIOO75962 3097 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 E2F8A0AVK6 867 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 MYBL1P10243 752 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 ARSAP15289 507 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 ATXN1P54253 815 aaKnown RBP22.69■■□□□ 1.22
SNX1-210ENST00000560260 GSDMDP57764 484 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 COG7P83436 770 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 TNK2Q07912 1038 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 BNIPLQ7Z465 357 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 BBS7Q8IWZ6 715 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 YAF2Q8IY57 180 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 OSCP1Q8WVF1 389 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 PLD4Q96BZ4 506 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 TRIM11Q96F44 468 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 BAG1Q99933 345 aaPredicted RBP22.69■■□□□ 1.22
SNX1-210ENST00000560260 FAM83CQ9BQN1 747 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 TRIM7Q9C029 511 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 LINC00597Q9H2U6 94 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 HPS4Q9NQG7 708 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 DDIT4Q9NX09 232 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 MYO1AQ9UBC5 1043 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 SH3BP1Q9Y3L3 701 aa22.69■■□□□ 1.22
SNX1-210ENST00000560260 SYNJ2BP-COX16A0A087WUM0 186 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 CHADO15335 359 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 SRFP11831 508 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 CORO1AP31146 461 aaKnown RBP22.68■■□□□ 1.22
SNX1-210ENST00000560260 TBX4P57082 545 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 ZNF252P-AS1Q0IIN9 211 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 NNTQ13423 1086 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 C15orf59Q2T9L4 293 aaPredicted RBP22.68■■□□□ 1.22
SNX1-210ENST00000560260 CCDC14Q49A88 953 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 HTR3DQ70Z44 454 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 TMTC1Q8IUR5 882 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 CCDC170Q8IYT3 715 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 BRD9Q9H8M2 597 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 PIGVQ9NUD9 493 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 PARVAQ9NVD7 372 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 COX16Q9P0S2 106 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 TLR6Q9Y2C9 796 aa22.68■■□□□ 1.22
SNX1-210ENST00000560260 ANKRD62A6NC57 917 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms