RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 TPGS1Q6ZTW0 290 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 CCDC186Q7Z3E2 898 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 JAKMIP2Q96AA8 810 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 CYFIP2Q96F07 1278 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 HSPA12BQ96MM6 686 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 NT5C1AQ9BXI3 368 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 NIF3L1Q9GZT8 377 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 CYP3A43Q9HB55 503 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 DNMT3LQ9UJW3 386 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 FBXO10Q9UK96 956 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 CYP8B1Q9UNU6 501 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 NEUROG3Q9Y4Z2 214 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 DOCK4Q8N1I0 1966 aa13.79□□□□□ -0.2
TPM1-220ENST00000559556 COL5A1P20908 1838 aaPredicted RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 A0A1W2PQD8 194 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 ARHGAP33O14559 1287 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 MDM4O15151 490 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 ZBTB24O43167 697 aaPredicted RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 CALUO43852 315 aaPredicted RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 CILPO75339 1184 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 STC2O76061 302 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 CISD3P0C7P0 127 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 PFKFB1P16118 471 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 PLA2G4AP47712 749 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 VAMP7P51809 220 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 ATXN3P54252 364 aaPredicted RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 DNM1Q05193 864 aaKnown RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 ENPEPQ07075 957 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 PKP1Q13835 747 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 C10orf120Q5SQS8 335 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 INTS8Q75QN2 995 aaKnown RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 HDDC3Q8N4P3 179 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 MINDY1Q8N5J2 469 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 DEFB119Q8N690 84 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 TAS1R2Q8TE23 839 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 P2RY11Q96G91 374 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 MRGPRX1Q96LB2 322 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 APOBEC3GQ9HC16 384 aaKnown RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 CD93Q9NPY3 652 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 FSCN3Q9NQT6 498 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 DNAAF2Q9NVR5 837 aaKnown RBP13.78□□□□□ -0.2
TPM1-220ENST00000559556 CACNA2D2Q9NY47 1150 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 CLIC5Q9NZA1 410 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 NAGPAQ9UK23 515 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 SLC27A6Q9Y2P4 619 aa13.78□□□□□ -0.2
TPM1-220ENST00000559556 A0A1B0GVL5 298 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 NPC1O15118 1278 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 HYAL3O43820 417 aaPredicted RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 KALRNO60229 2985 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 OPHN1O60890 802 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 GJB3O75712 270 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 PENKP01210 267 aaPredicted RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 TRIM49P0CI25 452 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 TRIM49CP0CI26 452 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 CMA1P23946 247 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 NR2F2P24468 414 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 SIM1P81133 766 aaPredicted RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 PPP3CAQ08209 521 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 PPP1R26Q5T8A7 1209 aaPredicted RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 SCD5Q86SK9 330 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 TADA2BQ86TJ2 420 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 TRIML1Q8N9V2 468 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 ZNF419Q96HQ0 510 aaPredicted RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 CDK5RAP1Q96SZ6 601 aaKnown RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 GTPBP2Q9BX10 602 aaKnown RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 DUSP16Q9BY84 665 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 PLK2Q9NYY3 685 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 NUDT5Q9UKK9 219 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 HPSEQ9Y251 543 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 ZNF510Q9Y2H8 683 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 RAD54BQ9Y620 910 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 USP3Q9Y6I4 520 aa13.77□□□□□ -0.21
TPM1-220ENST00000559556 HELZ2Q9BYK8 2649 aaKnown RBP13.77□□□□□ -0.21
TPM1-220ENST00000559556 ASXL3Q9C0F0 2248 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 SPAARA0A1B0GVQ0 90 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 RHOBTB3O94955 611 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 KIF20AO95235 890 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 KLKB1P03952 638 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 HSP90AA1P07900 732 aaKnown RBP13.76□□□□□ -0.21
TPM1-220ENST00000559556 SYPP08247 313 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 CD59P13987 128 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 GCLMP48507 274 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 ZNF132P52740 706 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 MCCD1P59942 119 aaPredicted RBP13.76□□□□□ -0.21
TPM1-220ENST00000559556 ENPP2Q13822 863 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 FYB2Q5VWT5 728 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 METTL3Q86U44 580 aaKnown RBP13.76□□□□□ -0.21
TPM1-220ENST00000559556 HSCBQ8IWL3 235 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 FAM186BQ8IYM0 893 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 FOXJ1Q92949 421 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 BHMTQ93088 406 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 DCLK3Q9C098 648 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 DNAI2Q9GZS0 605 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 SLC6A17Q9H1V8 727 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 FAM124BQ9H5Z6 455 aaPredicted RBP13.76□□□□□ -0.21
TPM1-220ENST00000559556 USP36Q9P275 1121 aaKnown RBP13.76□□□□□ -0.21
TPM1-220ENST00000559556 SUSD2Q9UGT4 822 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 RALYQ9UKM9 306 aaKnown RBP13.76□□□□□ -0.21
TPM1-220ENST00000559556 MSRB2Q9Y3D2 182 aa13.76□□□□□ -0.21
TPM1-220ENST00000559556 NFE2L3Q9Y4A8 694 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms