RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 TTC27Q6P3X3 843 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 PPP4R3CPQ6ZMV5 832 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 RHOUQ7L0Q8 258 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 MTDHQ86UE4 582 aaKnown RBP8.73□□□□□ -1.01
USP3-211ENST00000559257 ZNF354CQ86Y25 554 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 STX12Q86Y82 276 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 SSH3Q8TE77 659 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 GTF3C2Q8WUA4 911 aaPredicted RBP8.73□□□□□ -1.01
USP3-211ENST00000559257 ZNF341Q9BYN7 854 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 INTS2Q9H0H0 1204 aaKnown RBP8.73□□□□□ -1.01
USP3-211ENST00000559257 LHX5Q9H2C1 402 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 SLC35C2Q9NQQ7 365 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 ZC4H2Q9NQZ6 224 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 PARVAQ9NVD7 372 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 KCND2Q9NZV8 630 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 CPNE7Q9UBL6 633 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 PARP2Q9UGN5 583 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 PA2G4Q9UQ80 394 aaKnown RBP8.73□□□□□ -1.01
USP3-211ENST00000559257 DTX4Q9Y2E6 619 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 CORINQ9Y5Q5 1042 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 TECPR2O15040 1411 aa8.73□□□□□ -1.01
USP3-211ENST00000559257 CEP170BQ9Y4F5 1589 aaPredicted RBP8.73□□□□□ -1.01
USP3-211ENST00000559257 CPS1P31327 1500 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 FAM187AA6NFU0 413 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 MEI4A8MW99 385 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 J3QRK9 145 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 AXIN1O15169 862 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 DYNC1LI2O43237 492 aaPredicted RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 GCATO75600 419 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 CAMTA2O94983 1202 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 CRTAMO95727 393 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ITGB1P05556 798 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ACAT1P24752 427 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 DCKP27707 260 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 IL13P35225 146 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 SOX5P35711 763 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 C1orf146Q5VVC0 180 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 LPCAT4Q643R3 524 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 XKR5Q6UX68 686 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 BTN2A1Q7KYR7 527 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 HDDC2Q7Z4H3 204 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 AMIGO2Q86SJ2 522 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ANKRD42Q8N9B4 389 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 OR8K3Q8NH51 312 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 RHPN1Q8TCX5 695 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 FOXJ1Q92949 421 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 FBXL8Q96CD0 374 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ERLEC1Q96DZ1 483 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 WDR12Q9GZL7 423 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 RPF2Q9H7B2 306 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 KCNK13Q9HB14 408 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 RC3H2Q9HBD1 1191 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 KCNK9Q9NPC2 374 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 EHD3Q9NZN3 535 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ACTR3BQ9P1U1 418 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 DNMT3BQ9UBC3 853 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 MALT1Q9UDY8 824 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 SERTAD1Q9UHV2 236 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ADAMTS6Q9UKP5 1117 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 PLA2G4CQ9UP65 541 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 PLAGL2Q9UPG8 496 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 CAB39Q9Y376 341 aaPredicted RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 RPTORQ8N122 1335 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ESYT2A0FGR8 921 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 RBAK-RBAKDNI3L0D1 243 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 LINC01387J3KSC0 135 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 PLK4O00444 970 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 RIPK2O43353 540 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 TCEA3O75764 348 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 VNN1O95497 513 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 KRT8P05787 483 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 CALB1P05937 261 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 BRAFP15056 766 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 NPR3P17342 541 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 IDUAP35475 653 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ASMTP46597 345 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 SLCO1A2P46721 670 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 TRAPPC10P48553 1259 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 GDI2P50395 445 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 ARHGDIAP52565 204 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 GABREP78334 506 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 OASLQ15646 514 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 PKN2Q16513 984 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 EPHA10Q5JZY3 1008 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 UGT3A1Q6NUS8 523 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 SYCE2Q6PIF2 218 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 ANGPTL8Q6UXH0 198 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 PLEKHG7Q6ZR37 379 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 PRR23BQ6ZRT6 265 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 C2CD5Q86YS7 1000 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 TPH2Q8IWU9 490 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 DIS3L2Q8IYB7 885 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 ULK2Q8IYT8 1036 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 LRRC20Q8TCA0 184 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 NKD2Q969F2 451 aaPredicted RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 CDCA5Q96FF9 252 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 DCUN1D1Q96GG9 259 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 CNDP2Q96KP4 475 aaKnown RBP8.72□□□□□ -1.01
USP3-211ENST00000559257 ZNF560Q96MR9 790 aa8.72□□□□□ -1.01
USP3-211ENST00000559257 CRAMP1Q96RY5 1269 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms