RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ATXN10Q9UBB4 475 aa11.71□□□□□ -0.53
LDLR-208ENST00000558518 ATP6V1G1O75348 118 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 FLOT2Q14254 428 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 DACT2Q5SW24 774 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 WDR78Q5VTH9 848 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 RNF111Q6ZNA4 994 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 PIWIL2Q8TC59 973 aaKnown RBP11.71□□□□□ -0.54
LDLR-208ENST00000558518 MZB1Q8WU39 189 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 SGF29Q96ES7 293 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 HMGXB4Q9UGU5 601 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 USP21Q9UK80 565 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 DGAT1O75907 488 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 ITGA2BP08514 1039 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 ERVK-10P10266 1014 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 STIP1P31948 543 aaKnown RBP11.71□□□□□ -0.54
LDLR-208ENST00000558518 ACTR2P61160 394 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 MSLNQ13421 630 aaPredicted RBP11.71□□□□□ -0.54
LDLR-208ENST00000558518 CCNIQ14094 377 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 TTLL12Q14166 644 aaPredicted RBP11.71□□□□□ -0.54
LDLR-208ENST00000558518 TRIM67Q6ZTA4 783 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 MCF2L2Q86YR7 1114 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 WDTC1Q8N5D0 677 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 MCPH1Q8NEM0 835 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 ATG4CQ96DT6 458 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 HSPBAP1Q96EW2 488 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 MMADHCQ9H3L0 296 aaPredicted RBP11.71□□□□□ -0.54
LDLR-208ENST00000558518 CAB39LQ9H9S4 337 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 JPH1Q9HDC5 661 aaPredicted RBP11.71□□□□□ -0.54
LDLR-208ENST00000558518 CYTH4Q9UIA0 394 aa11.71□□□□□ -0.54
LDLR-208ENST00000558518 TPST1O60507 370 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 FKBP6O75344 327 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 ERBB2P04626 1255 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 ICAM1P05362 532 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 PSAPP07602 524 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 BPGMP07738 259 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 RPL10P27635 214 aaKnown RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 EPHA3P29320 983 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 ATXN1P54253 815 aaKnown RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 TLR1Q15399 786 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 BBS12Q6ZW61 710 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 ACAD11Q709F0 780 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 SNX32Q86XE0 403 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 PDSS2Q86YH6 399 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 LRRC43Q8N309 656 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 RXFP2Q8WXD0 754 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 C17orf75Q9HAS0 396 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 FEM1BQ9UK73 627 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 RPL26L1Q9UNX3 145 aaKnown RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 APOEP02649 317 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 AVPR1AP37288 418 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 NUMBP49757 651 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 RAP1GDS1P52306 607 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 DBN1Q16643 649 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 SPATA6LQ8N4H0 392 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 CCNYL1Q8N7R7 359 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 RNF149Q8NC42 400 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 DIS3LQ8TF46 1054 aaKnown RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 LENG1Q96BZ8 264 aaPredicted RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 DCUN1D1Q96GG9 259 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 CATSPER2Q96P56 530 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 BTBD7Q9P203 1132 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 HERC5Q9UII4 1024 aaKnown RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 DOLKQ9UPQ8 538 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 COMMD3-BMI1R4GMX3 469 aa11.7□□□□□ -0.54
LDLR-208ENST00000558518 TNRC6CQ9HCJ0 1690 aaKnown RBP11.7□□□□□ -0.54
LDLR-208ENST00000558518 H3BSA7 217 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 EDN1P05305 212 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 SERPINA6P08185 405 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 GARTP22102 1010 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 DLG2Q15700 870 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 AMHR2Q16671 573 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 TMEM198Q66K66 360 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 SNRNP48Q6IEG0 339 aaKnown RBP11.69□□□□□ -0.54
LDLR-208ENST00000558518 CYP2R1Q6VVX0 501 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 FAM160B2Q86V87 743 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 CCDC106Q9BWC9 280 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 IDI2Q9BXS1 227 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 NIF3L1Q9GZT8 377 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 C20orf96Q9NUD7 363 aaPredicted RBP11.69□□□□□ -0.54
LDLR-208ENST00000558518 THAP1Q9NVV9 213 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 AP4B1Q9Y6B7 739 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 CAPN14A8MX76 684 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 APOC4-APOC2K7ER74 178 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 ATP9BO43861 1147 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 RFPL1O75677 317 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 APOC2P02655 101 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 CRABP2P29373 138 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 ALDH1B1P30837 517 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 ADARP55265 1226 aaKnown RBP11.69□□□□□ -0.54
LDLR-208ENST00000558518 ART3Q13508 389 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 KLHDC10Q6PID8 442 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 CHSY1Q86X52 802 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 TRIM50Q86XT4 487 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 SULF1Q8IWU6 871 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 C12orf29Q8N999 325 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 EME1Q96AY2 570 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 TRPV6Q9H1D0 765 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 PSAT1Q9Y617 370 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 TEX264Q9Y6I9 313 aa11.69□□□□□ -0.54
LDLR-208ENST00000558518 CROCCQ5TZA2 2017 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms