RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ZNF132P52740 706 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 EFEMP1Q12805 493 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 CCINQ13939 588 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 EOGTQ5NDL2 527 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 GRAMD4Q6IC98 578 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 PPP1R2P3Q6NXS1 205 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 ZDHHC17Q8IUH5 632 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 ADGRG2Q8IZP9 1017 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 KRT222Q8N1A0 295 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 UBR7Q8N806 425 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 LMO3Q8TAP4 145 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 UBA3Q8TBC4 463 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 SERPINB11Q96P15 392 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 LRRC3BQ96PB8 259 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 KLF16Q9BXK1 252 aaPredicted RBP9.06□□□□□ -0.96
USP3-208ENST00000558285 ULBP1Q9BZM6 244 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 ARHGEF4Q9NR80 690 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 SPHK2Q9NRA0 654 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 TMEM30AQ9NV96 361 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 DNAJC12Q9UKB3 198 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 GMEB2Q9UKD1 530 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 ZNF318Q5VUA4 2279 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 REV3LO60673 3130 aa9.06□□□□□ -0.96
USP3-208ENST00000558285 SLC12A8A0AV02 714 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 TBC1D3BA6NDS4 549 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 GFRA3O60609 400 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 APOEP02649 317 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 CYP17A1P05093 508 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 GLI1P08151 1106 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 GALK1P51570 392 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 ARID5AQ03989 594 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 RAPGEF1Q13905 1077 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 EFHC1Q5JVL4 640 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 ACBD5Q5T8D3 534 aaPredicted RBP9.05□□□□□ -0.96
USP3-208ENST00000558285 BSPRYQ5W0U4 402 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 BEND5Q7L4P6 421 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 LONP2Q86WA8 852 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 TTC30AQ86WT1 665 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 ZNF677Q86XU0 584 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 ARHGEF19Q8IW93 802 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 TMEM35BQ8NCS4 154 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SLC35F5Q8WV83 523 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SHC3Q92529 594 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 FAM149B1Q96BN6 582 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SPAG5Q96R06 1193 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 BBS2Q9BXC9 721 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SLC2A11Q9BYW1 496 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 LHX5Q9H2C1 402 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 POLMQ9NP87 494 aaPredicted RBP9.05□□□□□ -0.96
USP3-208ENST00000558285 RRN3Q9NYV6 651 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 RAPGEFL1Q9UHV5 662 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 MTF2Q9Y483 593 aaPredicted RBP9.05□□□□□ -0.96
USP3-208ENST00000558285 KMT2EQ8IZD2 1858 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 DOCK6Q96HP0 2047 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 GOLGA6L6A8MZA4 724 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 NRG2O14511 850 aaPredicted RBP9.05□□□□□ -0.96
USP3-208ENST00000558285 IRAK2O43187 625 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 TIMM44O43615 452 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 LRRN2O75325 713 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 APBB3O95704 486 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 LSM8O95777 96 aaKnown RBP9.05□□□□□ -0.96
USP3-208ENST00000558285 LTFP02788 710 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 VCANP13611 3396 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SDHBP21912 280 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 PTPRDP23468 1912 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 DGKEP52429 567 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 NNTQ13423 1086 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 MPPE1Q53F39 396 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 LY6G5CQ5SRR4 150 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 MUC6Q6W4X9 2439 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 CEP68Q76N32 757 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SND1Q7KZF4 910 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP3-208ENST00000558285 SYT13Q7L8C5 426 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 GPRIN1Q7Z2K8 1008 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 NEK11Q8NG66 645 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 GPT2Q8TD30 523 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 ZNF606Q8WXB4 792 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 BPIFA3Q9BQP9 254 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 STK33Q9BYT3 514 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 PLCB1Q9NQ66 1216 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 SPTBN5Q9NRC6 3674 aaKnown RBP9.05□□□□□ -0.96
USP3-208ENST00000558285 MARK1Q9P0L2 795 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 NCDNQ9UBB6 729 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 PCDHGC3Q9UN70 934 aa9.05□□□□□ -0.96
USP3-208ENST00000558285 ZNF638Q14966 1978 aaKnown RBP9.04□□□□□ -0.96
USP3-208ENST00000558285 MIA3Q5JRA6 1907 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 NEDD8-MDP1E9PL57 170 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 RNF40O75150 1001 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 KAT7O95251 611 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 NCAM1P13591 858 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 SLC9A1P19634 815 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 CORO1AP31146 461 aaKnown RBP9.04□□□□□ -0.96
USP3-208ENST00000558285 DPP6P42658 865 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 DAOAP59103 153 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 CDK17Q00537 523 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 TYRO3Q06418 890 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 RING1Q06587 406 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 FSTL4Q6MZW2 842 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 TRIM72Q6ZMU5 477 aa9.04□□□□□ -0.96
USP3-208ENST00000558285 CACNA2D4Q7Z3S7 1137 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms