RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 CELF5Q8N6W0 485 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 RSAD2Q8WXG1 361 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 RSPRY1Q96DX4 576 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 PPP1R9BQ96SB3 815 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 TBCBQ99426 244 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 DDX23Q9BUQ8 820 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 KLF16Q9BXK1 252 aaPredicted RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 TRIM7Q9C029 511 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 REXO2Q9Y3B8 237 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 SH3BP1Q9Y3L3 701 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 MTCL1Q9Y4B5 1905 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 PATJQ8NI35 1801 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 C2CD4BA6NLJ0 364 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 HEPACAM2A8MVW5 462 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 BMP1P13497 986 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 DESP17661 470 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 FCARP24071 287 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 PSMA2P25787 234 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 GBP1P32455 592 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 TBX4P57082 545 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 COG7P83436 770 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 ZP2Q05996 745 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 GRM2Q14416 872 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC25A52Q3SY17 297 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 ZNF276Q8N554 614 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 ZNF564Q8TBZ8 553 aaPredicted RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 ZFRQ96KR1 1074 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 RPP25Q9BUL9 199 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 KIF9Q9HAQ2 790 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 PRKAG3Q9UGI9 489 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 ANAPC7Q9UJX3 599 aa14.64□□□□□ -0.07
VIPAS39-208ENST00000556412 COL6A3P12111 3177 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 TMEM191CA6NGB0 347 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 ASGR2P07307 311 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 DEUP1Q05D60 604 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 HTR4Q13639 388 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 CCDC14Q49A88 953 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 SH3PXD2AQ5TCZ1 1133 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 CC2D1AQ6P1N0 951 aaPredicted RBP14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 ARCQ7LC44 396 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 DDX42Q86XP3 938 aaKnown RBP eCLIP14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 YAF2Q8IY57 180 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 ZDHHC14Q8IZN3 488 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 RIN3Q8TB24 985 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 BTBD6Q96KE9 485 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 NPY6RQ99463 290 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 TRPV4Q9HBA0 871 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 OSGEPQ9NPF4 335 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 RRN3Q9NYV6 651 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 LSM7Q9UK45 103 aaKnown RBP14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 INTUQ9ULD6 942 aa14.63□□□□□ -0.07
VIPAS39-208ENST00000556412 LOC730098B7Z3J9 87 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 IRAK2O43187 625 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 CCP110O43303 1012 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 MOCS2O96007 188 aaPredicted RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 NOP2P46087 812 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 KPNA1P52294 538 aaPredicted RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ZNF143P52747 638 aaPredicted RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ATXN1P54253 815 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 OGDHQ02218 1023 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 TRIP4Q15650 581 aaPredicted RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 VITQ6UXI7 678 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 SND1Q7KZF4 910 aaKnown RBP eCLIP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 SLC35G2Q8TBE7 412 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 BPIFB1Q8TDL5 484 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 FAM172AQ8WUF8 416 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 WBP2Q969T9 261 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ELSPBP1Q96BH3 223 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 LRRC3BQ96PB8 259 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ADAM33Q9BZ11 813 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 PLA2G2FQ9BZM2 168 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 KCNF1Q9H3M0 494 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 KCNK12Q9HB15 430 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 PIGVQ9NUD9 493 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 CALCOCO1Q9P1Z2 691 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 UVRAGQ9P2Y5 699 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 TLR6Q9Y2C9 796 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 HBS1LQ9Y450 684 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 RCCD1A6NED2 376 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 TMEM110-MUSTN1A8MSY1 372 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ANHXE9PGG2 379 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ECI2O75521 394 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 STC2O76061 302 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 APOEP02649 317 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 WEE1P30291 646 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 CORO1AP31146 461 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 RDXP35241 583 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 PTPN9P43378 593 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 HARS2P49590 506 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 VAV2P52735 878 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 NAP1L1P55209 391 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 USP4Q13107 963 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ZNF77Q15935 545 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 RAB6CQ53S08 254 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ZC3H12AQ5D1E8 599 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 OTUD1Q5VV17 481 aaPredicted RBP14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 FAM131BQ86XD5 332 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 RHOT2Q8IXI1 618 aa14.62□□□□□ -0.07
VIPAS39-208ENST00000556412 ADAMTS19Q8TE59 1207 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms