RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 OTUD3Q5T2D3 398 aaPredicted RBP3.99□□□□□ -1.77
SCFD1-218ENST00000556256 TRILQ7L0X0 811 aa3.99□□□□□ -1.77
SCFD1-218ENST00000556256 TRAPPC11Q7Z392 1133 aa3.99□□□□□ -1.77
SCFD1-218ENST00000556256 ELP5Q8TE02 316 aa3.99□□□□□ -1.77
SCFD1-218ENST00000556256 HPS3Q969F9 1004 aa3.99□□□□□ -1.77
SCFD1-218ENST00000556256 HSPBAP1Q96EW2 488 aa3.99□□□□□ -1.77
SCFD1-218ENST00000556256 SF3B5Q9BWJ5 86 aaKnown RBP3.99□□□□□ -1.77
SCFD1-218ENST00000556256 MOV10Q9HCE1 1003 aaKnown RBP3.99□□□□□ -1.77
SCFD1-218ENST00000556256 WNT16Q9UBV4 365 aa3.99□□□□□ -1.77
SCFD1-218ENST00000556256 PODXLO00592 558 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 PRPF4O43172 522 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCFD1-218ENST00000556256 CA12O43570 354 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 TBC1D4O60343 1298 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 CGAP01215 116 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 PDGFRBP09619 1106 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 PARP1P09874 1014 aaKnown RBP3.98□□□□□ -1.77
SCFD1-218ENST00000556256 IDUAP35475 653 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 INO80DQ53TQ3 878 aaPredicted RBP3.98□□□□□ -1.77
SCFD1-218ENST00000556256 SLC39A5Q6ZMH5 540 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 GRAMD1CQ8IYS0 662 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 PPP1R9BQ96SB3 815 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 MAP3K14Q99558 947 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 THSD1Q9NS62 852 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 HOMER2Q9NSB8 354 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 RIMKLBQ9ULI2 386 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 SPEF1Q9Y4P9 236 aa3.98□□□□□ -1.77
SCFD1-218ENST00000556256 HEMK1Q9Y5R4 338 aaPredicted RBP3.98□□□□□ -1.77
SCFD1-218ENST00000556256 H0YGN5 161 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 RRP9O43818 475 aaKnown RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 MBPP02686 304 aaPredicted RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 ST6GAL1P15907 406 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 GALNSP34059 522 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 ITGA8P53708 1063 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 WDR5P61964 334 aaKnown RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 TXNL4AP83876 142 aaKnown RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 RAB32Q13637 225 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 PLEKHG6Q3KR16 790 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 BRDTQ58F21 947 aaPredicted RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 TMEM240Q5SV17 173 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 TTLL5Q6EMB2 1281 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 RTL10Q7L3V2 364 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 ADGRF4Q8IZF3 695 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 OR56A3Q8NH54 315 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 C1GALT1C1Q96EU7 318 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 PRR11Q96HE9 360 aaPredicted RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 VPS50Q96JG6 964 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 NT5C1BQ96P26 610 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 PIMREGQ9BSJ6 248 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 GATA5Q9BWX5 397 aaPredicted RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 A1CFQ9NQ94 594 aaKnown RBP3.97□□□□□ -1.77
SCFD1-218ENST00000556256 VPS45Q9NRW7 570 aa3.97□□□□□ -1.77
SCFD1-218ENST00000556256 WASHC2CQ9Y4E1 1318 aa3.96□□□□□ -1.77
SCFD1-218ENST00000556256 LOC102723971A0A1B0GUV8 181 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 H7C4K7 107 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 KITP10721 976 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 PTDSS1P48651 473 aaKnown RBP3.96□□□□□ -1.78
SCFD1-218ENST00000556256 CCDC15Q0P6D6 951 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 ST3GAL2Q16842 350 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 SMTNL2Q2TAL5 461 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 KRT71Q3SY84 523 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 ATAT1Q5SQI0 421 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 PIK3CD-AS1Q5SR53 167 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 USP49Q70CQ1 688 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 SPSB4Q96A44 273 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 SMAD5Q99717 465 aaKnown RBP3.96□□□□□ -1.78
SCFD1-218ENST00000556256 ASPSCR1Q9BZE9 553 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 ZNF518BQ9C0D4 1074 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 NCKIPSDQ9NZQ3 722 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 STEAP1Q9UHE8 339 aa3.96□□□□□ -1.78
SCFD1-218ENST00000556256 PHGDHO43175 533 aaKnown RBP3.95□□□□□ -1.78
SCFD1-218ENST00000556256 SOCS5O75159 536 aa3.95□□□□□ -1.78
SCFD1-218ENST00000556256 TMIGD3P0DMS9 266 aaPredicted RBP3.95□□□□□ -1.78
SCFD1-218ENST00000556256 TFEBP19484 476 aa3.95□□□□□ -1.78
SCFD1-218ENST00000556256 KCNJ4P48050 445 aa3.95□□□□□ -1.78
SCFD1-218ENST00000556256 COMPP49747 757 aaPredicted RBP3.95□□□□□ -1.78
SCFD1-218ENST00000556256 KRTAP24-1Q3LI83 254 aa3.95□□□□□ -1.78
SCFD1-218ENST00000556256 MAML1Q92585 1016 aa3.95□□□□□ -1.78
SCFD1-218ENST00000556256 CINPQ9BW66 212 aaPredicted RBP3.95□□□□□ -1.78
SCFD1-218ENST00000556256 INSL5Q9Y5Q6 135 aa3.95□□□□□ -1.78
SCFD1-218ENST00000556256 KIR2DS5A0A0G2JLQ3 304 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 A0A1W2PPL8 197 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 RPS10-NUDT3A0A1W2PQS6 291 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 A6NNC1 897 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 KIR2DS3K7RE56 304 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 CCP110O43303 1012 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 AP1G1O43747 822 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 LDB3O75112 727 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 DDNO94850 711 aaPredicted RBP3.94□□□□□ -1.78
SCFD1-218ENST00000556256 HMGB1P09429 215 aaKnown RBP3.94□□□□□ -1.78
SCFD1-218ENST00000556256 NTSR1P30989 418 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 AGFG1P52594 562 aaKnown RBP3.94□□□□□ -1.78
SCFD1-218ENST00000556256 EIF4A1P60842 406 aaKnown RBP3.94□□□□□ -1.78
SCFD1-218ENST00000556256 DLGAP5Q15398 846 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 SRGAP1Q7Z6B7 1085 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 MORC1Q86VD1 984 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 LPAR1Q92633 364 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 PHF21BQ96EK2 531 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 C6orf106Q9H6K1 298 aaPredicted RBP3.94□□□□□ -1.78
SCFD1-218ENST00000556256 ZNF556Q9HAH1 456 aa3.94□□□□□ -1.78
SCFD1-218ENST00000556256 HIF1ANQ9NWT6 349 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms