RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 UNC45BQ8IWX7 931 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 ATP6V0D2Q8N8Y2 350 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 LRRC57Q8N9N7 239 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 NDRG1Q92597 394 aaKnown RBP11.66□□□□□ -0.54
SHMT2-220ENST00000555634 PLD4Q96BZ4 506 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 FAM161BQ96MY7 647 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 NECTIN4Q96NY8 510 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 NAP1L3Q99457 506 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-220ENST00000555634 NPY6RQ99463 290 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 DDX50Q9BQ39 737 aaKnown RBP11.66□□□□□ -0.54
SHMT2-220ENST00000555634 TTYH1Q9H313 450 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-220ENST00000555634 WDCPQ9H6R7 721 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 USP18Q9UMW8 372 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 MRPS23Q9Y3D9 190 aaKnown RBP11.66□□□□□ -0.54
SHMT2-220ENST00000555634 HYOU1Q9Y4L1 999 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 MTCH2Q9Y6C9 303 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 MYO7AQ13402 2215 aa11.66□□□□□ -0.54
SHMT2-220ENST00000555634 A0A0U1RQJ8 604 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 A0A1W2PRU2 124 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 IRAK2O43187 625 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 LRCH4O75427 683 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 GABBR2O75899 941 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ZDHHC11BP0C7U3 371 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 FSHRP23945 695 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ARL4AP40617 200 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 MTHFRP42898 656 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 SLC11A2P49281 568 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 DNA2P51530 1060 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ZNF135P52742 658 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 EPHA5P54756 1037 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 RWDD2BP57060 319 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TBX4P57082 545 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TUBB2AQ13885 445 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 PPP2R5DQ14738 602 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TRIP4Q15650 581 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 C15orf59Q2T9L4 293 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 BOLA3Q53S33 107 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ATAT1Q5SQI0 421 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 GPR158Q5T848 1215 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 HFE2Q6ZVN8 426 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 BHLHA9Q7RTU4 235 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 GRASPQ7Z6J2 395 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 SLFN11Q7Z7L1 901 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 SCD5Q86SK9 330 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 NT5DC3Q86UY8 548 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TMC8Q8IU68 726 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 VN1R2Q8NFZ6 395 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TEKT4Q8WW24 435 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ATRIPQ8WXE1 791 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 PABPC5Q96DU9 382 aaKnown RBP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 EPAS1Q99814 870 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TUBB2BQ9BVA1 445 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 TRIM7Q9C029 511 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 DCLK3Q9C098 648 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 CCSER2Q9H7U1 834 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ZWILCHQ9H900 591 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 NMUR1Q9HB89 426 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 ZNF334Q9HCZ1 680 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.65□□□□□ -0.54
SHMT2-220ENST00000555634 SALL4Q9UJQ4 1053 aa11.65□□□□□ -0.54
SHMT2-220ENST00000555634 LAMA2P24043 3122 aaKnown RBP11.64□□□□□ -0.55
SHMT2-220ENST00000555634 SLC12A8A0AV02 714 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 LRRD1A4D1F6 860 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 KCNK3O14649 394 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 MDM4O15151 490 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 HDCP19113 662 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 CTNNA2P26232 953 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 MIPP30301 263 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 CYP4F8P98187 520 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 OGDHQ02218 1023 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 RING1Q06587 406 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 CKAP4Q07065 602 aaKnown RBP11.64□□□□□ -0.55
SHMT2-220ENST00000555634 ZNF252P-AS1Q0IIN9 211 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 MEI1Q5TIA1 1274 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 SYPL2Q5VXT5 272 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 GET4Q7L5D6 327 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-220ENST00000555634 GPR149Q86SP6 731 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 FAM131BQ86XD5 332 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 MAB21L3Q8N8X9 362 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 KCTD6Q8NC69 237 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 ADAM32Q8TC27 787 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-220ENST00000555634 HSPH1Q92598 858 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 NT5C3BQ969T7 300 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 NTAN1Q96AB6 310 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 LRCH3Q96II8 777 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 IRX2Q9BZI1 471 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-220ENST00000555634 CARD9Q9H257 536 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 TASP1Q9H6P5 420 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 KIF9Q9HAQ2 790 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.64□□□□□ -0.55
SHMT2-220ENST00000555634 HCFC1R1Q9NWW0 138 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 DONSONQ9NYP3 566 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 PCSK1NQ9UHG2 260 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 AP4E1Q9UPM8 1137 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 FAM50BQ9Y247 325 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 ZNF510Q9Y2H8 683 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 SH3BP1Q9Y3L3 701 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 SAR1BQ9Y6B6 198 aa11.64□□□□□ -0.55
SHMT2-220ENST00000555634 PRRC2BQ5JSZ5 2229 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms