RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TMEM110Q86TL2 294 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 SFTPA1Q8IWL2 248 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 WDTC1Q8N5D0 677 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 GOLGA1Q92805 767 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 CPXM1Q96SM3 734 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 BBS2Q9BXC9 721 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 STK33Q9BYT3 514 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 MARK1Q9P0L2 795 aa14.34□□□□□ -0.11
SHMT2-219ENST00000555563 HBS1LQ9Y450 684 aaKnown RBP14.34□□□□□ -0.11
SHMT2-219ENST00000555563 ANTXRLA6NF34 631 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 K7ESF4 209 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 TULP3O75386 442 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 PAPSS2O95340 614 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 FYNP06241 537 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 HOXC13P31276 330 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 KRT9P35527 623 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 ZNF165P49910 485 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 SEC13P55735 322 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 BPIFB4P59827 614 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 POLR2FP61218 127 aaKnown RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 FOXK2Q01167 660 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 UBXN1Q04323 297 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 PPP2R5DQ14738 602 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 TRIP4Q15650 581 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 ZC3H14Q6PJT7 736 aaKnown RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 DENND1CQ8IV53 801 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 PHTF2Q8N3S3 785 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 NAT16Q8N8M0 369 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 RPLP0P6Q8NHW5 317 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 NELL1Q92832 810 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 BHMTQ93088 406 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 FAM149B1Q96BN6 582 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 P2RY11Q96G91 374 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 PIWIL1Q96J94 861 aaKnown RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 PNKPQ96T60 521 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 DCLK3Q9C098 648 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 LHX5Q9H2C1 402 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 NLRC4Q9NPP4 1024 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 ARHGEF4Q9NR80 690 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 AGO1Q9UL18 857 aaKnown RBP14.33□□□□□ -0.12
SHMT2-219ENST00000555563 ZNF510Q9Y2H8 683 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 CEP83Q9Y592 693 aa14.33□□□□□ -0.12
SHMT2-219ENST00000555563 LRRC10BA6NIK2 292 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 SMTNL1A8MU46 457 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 CHURC1-FNTBB4DL54 471 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 K7EQS6 105 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 CACNG3O60359 315 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 KAT7O95251 611 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 IGLV3-27P01718 113 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 ERBB2P04626 1255 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 APODP05090 189 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 CHRM1P11229 460 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-219ENST00000555563 NCAM1P13591 858 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 TYRP14679 529 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 JAM2P57087 298 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 DMWDQ09019 674 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 PTPN20Q4JDL3 420 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 TAF3Q5VWG9 929 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 ASCL5Q7RTU5 278 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 NOP9Q86U38 636 aaKnown RBP14.32□□□□□ -0.12
SHMT2-219ENST00000555563 EPS8L1Q8TE68 723 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 DQX1Q8TE96 717 aaKnown RBP14.32□□□□□ -0.12
SHMT2-219ENST00000555563 PPP1R13BQ96KQ4 1090 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 PCMTD1Q96MG8 357 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-219ENST00000555563 ERGIC2Q96RQ1 377 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 DNAJC17Q9NVM6 304 aaKnown RBP14.32□□□□□ -0.12
SHMT2-219ENST00000555563 POLR3BQ9NW08 1133 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-219ENST00000555563 ZSCAN32Q9NX65 697 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 NAALADL1Q9UQQ1 740 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 PCDHGA2Q9Y5H1 932 aa14.32□□□□□ -0.12
SHMT2-219ENST00000555563 TRIM24O15164 1050 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 ATG13O75143 517 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 GFPT2O94808 682 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 CDH5P33151 784 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-219ENST00000555563 SOX5P35711 763 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 GRIA2P42262 883 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 HARS2P49590 506 aaKnown RBP14.31□□□□□ -0.12
SHMT2-219ENST00000555563 IQCB1Q15051 598 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 TAF5Q15542 800 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 GRAMD4Q6IC98 578 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 FAM183BPQ6ZVS7 135 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 TAC4Q86UU9 113 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 FAM217AQ8IXS0 508 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 TERB1Q8NA31 727 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 ZBTB44Q8NCP5 570 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 NEK11Q8NG66 645 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 IPO4Q8TEX9 1081 aaKnown RBP14.31□□□□□ -0.12
SHMT2-219ENST00000555563 USP33Q8TEY7 942 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 SLC20A1Q8WUM9 679 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 DDX1Q92499 740 aaKnown RBP14.31□□□□□ -0.12
SHMT2-219ENST00000555563 NKD2Q969F2 451 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-219ENST00000555563 ACDQ96AP0 544 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 NOX5Q96PH1 765 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 SPAG5Q96R06 1193 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 TRIM62Q9BVG3 475 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 FAM126AQ9BYI3 521 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-219ENST00000555563 PLK2Q9NYY3 685 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 WDR35Q9P2L0 1181 aa14.31□□□□□ -0.12
SHMT2-219ENST00000555563 DEC1Q9P2X7 70 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms