RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZNF280BQ86YH2 543 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 CDKL3Q8IVW4 592 aaPredicted RBP27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 TMLHEQ9NVH6 421 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 CWC15Q9P013 229 aaKnown RBP27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 PAK5Q9P286 719 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 NAALADL1Q9UQQ1 740 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 HEY1Q9Y5J3 304 aa27.34■■□□□ 1.97
CCDC88C-205ENST00000553403 USP17L7P0C7H9 530 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 BDNFP23560 247 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 MDH1P40925 334 aaKnown RBP27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 RABGGTBP53611 331 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 PITX1P78337 314 aaPredicted RBP27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 AUHQ13825 339 aaKnown RBP27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 STAT4Q14765 748 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 NTAN1Q96AB6 310 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 CCDC77Q9BR77 488 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 TBC1D13Q9NVG8 400 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 H3BRJ5 948 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 B4GALT3O60512 393 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 IVLP07476 585 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 YWHAHQ04917 246 aaPredicted RBP27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 C4orf22Q6V702 233 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 BHLHA9Q7RTU4 235 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 LRRTM3Q86VH5 581 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 C9orf72Q96LT7 481 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 RHOBTB2Q9BYZ6 727 aa27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 CNOT10Q9H9A5 744 aaKnown RBP27.33■■□□□ 1.97
CCDC88C-205ENST00000553403 CDR1P51861 262 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 ARL4CP56559 192 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 HIF1AQ16665 826 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 SKIDA1Q1XH10 827 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 C4orf50Q6ZRC1 276 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 TMEM209Q96SK2 561 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 SLC12A6Q9UHW9 1150 aa27.32■■□□□ 1.96
CCDC88C-205ENST00000553403 SMIM23A6NLE4 172 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 DCDC2CA8MYV0 355 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 KCNN4O15554 427 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 NBNO60934 754 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 PLEKHG4Q58EX7 1191 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 EFHC2Q5JST6 749 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 ANKRD22Q5VYY1 191 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 LRRC31Q6UY01 552 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 BZW1Q7L1Q6 419 aaKnown RBP27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 SLC7A14Q8TBB6 771 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 SH3TC2Q8TF17 1288 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 FAM193BQ96PV7 902 aaPredicted RBP27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 TRIM62Q9BVG3 475 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 MAGEB5Q9BZ81 275 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 UNC93B1Q9H1C4 597 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 PIGVQ9NUD9 493 aa27.31■■□□□ 1.96
CCDC88C-205ENST00000553403 A0A087WUV0 522 aaPredicted RBP27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SRRM3A6NNA2 597 aaPredicted RBP27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 F8W810 466 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 ENPP3O14638 875 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 TRAPPC3O43617 180 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 F9P00740 461 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 RBL1P28749 1068 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 RNASELQ05823 741 aaKnown RBP27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SCAPQ12770 1279 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 NME3Q13232 169 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 LONRF1Q17RB8 773 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SLC45A4Q5BKX6 768 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 NCBP2-AS2Q69YL0 99 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 BEND5Q7L4P6 421 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 PYROXD2Q8N2H3 581 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 ERICH4A6NGS2 130 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 PITPNM1O00562 1244 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 OAZ2O95190 189 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 NCAM1P13591 858 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 GOT1P17174 413 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 AMPD1P23109 780 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 ATP5DP30049 168 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SLCO1A2P46721 670 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 OR1G1P47890 313 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 CBLBQ13191 982 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 GPNMBQ14956 572 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SPATA2LQ8IUW3 424 aaPredicted RBP27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 RNF139Q8WU17 664 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SEPT8Q92599 483 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 TMEM106CQ9BVX2 250 aa27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 WDR6Q9NNW5 1121 aaKnown RBP27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 COL4A4P53420 1690 aaPredicted RBP27.3■■□□□ 1.96
CCDC88C-205ENST00000553403 SF3B1O75533 1304 aaKnown RBP eCLIP27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 HACD1B0YJ81 288 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 E7ESA3 106 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 CHADO15335 359 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 ADRA1BP35368 520 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 BASP1P80723 227 aaKnown RBP27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 GBE1Q04446 702 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 SLC10A2Q12908 348 aaPredicted RBP27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 PDIA2Q13087 525 aaKnown RBP27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 DBF4BQ8NFT6 615 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 APBB2Q92870 758 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 ARMC5Q96C12 935 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 QKIQ96PU8 341 aaKnown RBP eCLIP27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 PAK6Q9NQU5 681 aaPredicted RBP27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 ARHGEF4Q9NR80 690 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 FBXW11Q9UKB1 542 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 PCDHB7Q9Y5E2 793 aa27.29■■□□□ 1.96
CCDC88C-205ENST00000553403 SYNJ2BP-COX16A0A087WUM0 186 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms