RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RAB6CQ53S08 254 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 C4orf22Q6V702 233 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 TIFABQ6ZNK6 161 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 PYDC1Q8WXC3 89 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 TMEM176AQ96HP8 235 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 SIGLEC10Q96LC7 697 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 TWNKQ96RR1 684 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 RAB6CQ9H0N0 254 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 DNAJC16Q9Y2G8 782 aa18.15■□□□□ 0.5
SYNE3-202ENST00000553340 CCNT2O60583 730 aaKnown RBP18.14■□□□□ 0.49
SYNE3-202ENST00000553340 TUBB3Q13509 450 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 TMEM132BQ14DG7 1078 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 PDCD2Q16342 344 aaPredicted RBP18.14■□□□□ 0.49
SYNE3-202ENST00000553340 STXBP5Q5T5C0 1151 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 TRIM56Q9BRZ2 755 aaKnown RBP18.14■□□□□ 0.49
SYNE3-202ENST00000553340 SLC4A7Q9Y6M7 1214 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 TOP3BO95985 862 aaKnown RBP18.14■□□□□ 0.49
SYNE3-202ENST00000553340 IL4RP24394 825 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 MAGEA3P43357 314 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 STAT5BP51692 787 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 BOLA3Q53S33 107 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 RABGAP1LQ5R372 815 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 IER5Q5VY09 327 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 SCYL2Q6P3W7 929 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 MARK2Q7KZI7 788 aaKnown RBP18.14■□□□□ 0.49
SYNE3-202ENST00000553340 RTKN2Q8IZC4 609 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 PQLC3Q8N755 202 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 RNF149Q8NC42 400 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 SLC26A7Q8TE54 656 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 NCSTNQ92542 709 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 JADE3Q92613 823 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 PCYT2Q99447 389 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 TEX13BQ9BXU2 312 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 ELOVL4Q9GZR5 314 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 HMGXB4Q9UGU5 601 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 PCDHA11Q9Y5I1 949 aa18.14■□□□□ 0.49
SYNE3-202ENST00000553340 MAP3K6O95382 1288 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 SLC1A6P48664 564 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 LRRC36Q1X8D7 754 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 MBLAC2Q68D91 279 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 OR6B2Q6IFH4 312 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 TRNP1Q6NT89 227 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 MPZL3Q6UWV2 235 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 POU5F2Q8N7G0 328 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 KLHL4Q9C0H6 718 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 STK32BQ9NY57 414 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 ITGA11Q9UKX5 1188 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 ITM2AO43736 263 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 CILPO75339 1184 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 CSDE1O75534 798 aaKnown RBP18.13■□□□□ 0.49
SYNE3-202ENST00000553340 LYPLA1O75608 230 aaPredicted RBP18.13■□□□□ 0.49
SYNE3-202ENST00000553340 EPHB1P54762 984 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 XIAPP98170 497 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 LAMTOR4Q0VGL1 99 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 TNFAIP1Q13829 316 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 RALGPS1Q5JS13 557 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 TEDDM1Q5T9Z0 273 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 SLC9A4Q6AI14 798 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 DPY19L2Q6NUT2 758 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 MPP5Q8N3R9 675 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 SHKBP1Q8TBC3 707 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 UBA3Q8TBC4 463 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 ZNF778Q96MU6 729 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 FAM96AQ9H5X1 160 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 MYOZ2Q9NPC6 264 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 ADAMTS5Q9UNA0 930 aa18.13■□□□□ 0.49
SYNE3-202ENST00000553340 OPHN1O60890 802 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 SIN3BO75182 1162 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 UQCRBP14927 111 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 RPL10AP62906 217 aaKnown RBP18.12■□□□□ 0.49
SYNE3-202ENST00000553340 FAM160B1Q5W0V3 765 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 ZNF534Q76KX8 674 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 DPH6Q7L8W6 267 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 CDKL3Q8IVW4 592 aaPredicted RBP18.12■□□□□ 0.49
SYNE3-202ENST00000553340 PCDH19Q8TAB3 1148 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 ACMSDQ8TDX5 336 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 ATP2A3Q93084 1043 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 HEXIM2Q96MH2 286 aaKnown RBP18.12■□□□□ 0.49
SYNE3-202ENST00000553340 GPATCH2LQ9NWQ4 482 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 SIX4Q9UIU6 781 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 PIK3R2O00459 728 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 GLRA3O75311 464 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 METTL18O95568 372 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 GSRP00390 522 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 VDRP11473 427 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 TPSB2P20231 275 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 L1CAMP32004 1257 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 MXD4Q14582 209 aaPredicted RBP18.12■□□□□ 0.49
SYNE3-202ENST00000553340 TPSAB1Q15661 275 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 SFT2D3Q587I9 215 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 C16orf46Q6P387 395 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 DENND5BQ6ZUT9 1274 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 EGFL6Q8IUX8 553 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 PPP4R1Q8TF05 950 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 MMP19Q99542 508 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 GCOM2Q9BZD3 368 aaPredicted RBP18.12■□□□□ 0.49
SYNE3-202ENST00000553340 MIS12Q9H081 205 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 PCDH18Q9HCL0 1135 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 TBC1D30Q9Y2I9 924 aa18.12■□□□□ 0.49
SYNE3-202ENST00000553340 COL4A5P29400 1685 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms